Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC15.57■□□□□ 0.08
APOEP02649 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
APOEP02649 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
APOEP02649 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
APOEP02649 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC15.57■□□□□ 0.08
APOEP02649 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
APOEP02649 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
APOEP02649 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
APOEP02649 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC15.57■□□□□ 0.08
APOEP02649 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC15.57■□□□□ 0.08
APOEP02649 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
APOEP02649 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
APOEP02649 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
APOEP02649 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
APOEP02649 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
APOEP02649 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
APOEP02649 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
APOEP02649 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
APOEP02649 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
APOEP02649 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC15.56■□□□□ 0.08
APOEP02649 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
APOEP02649 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC15.56■□□□□ 0.08
APOEP02649 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
APOEP02649 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
APOEP02649 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
APOEP02649 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC15.56■□□□□ 0.08
APOEP02649 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
APOEP02649 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
APOEP02649 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
APOEP02649 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
APOEP02649 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
APOEP02649 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
APOEP02649 USP28-214ENST00000545540 3431 ntTSL 2 BASIC15.56■□□□□ 0.08
APOEP02649 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC15.56■□□□□ 0.08
APOEP02649 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
APOEP02649 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
APOEP02649 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
APOEP02649 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
APOEP02649 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
APOEP02649 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC15.56■□□□□ 0.08
APOEP02649 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
APOEP02649 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC15.56■□□□□ 0.08
APOEP02649 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
APOEP02649 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC15.56■□□□□ 0.08
APOEP02649 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC15.56■□□□□ 0.08
APOEP02649 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC15.56■□□□□ 0.08
APOEP02649 RN7SL713P-201ENST00000582127 302 ntBASIC15.56■□□□□ 0.08
APOEP02649 AC010328.2-201ENST00000597698 1111 ntBASIC15.56■□□□□ 0.08
APOEP02649 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
APOEP02649 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
APOEP02649 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC15.56■□□□□ 0.08
APOEP02649 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC15.56■□□□□ 0.08
APOEP02649 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC15.56■□□□□ 0.08
APOEP02649 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
APOEP02649 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
APOEP02649 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
APOEP02649 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
APOEP02649 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
APOEP02649 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
APOEP02649 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
APOEP02649 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC15.55■□□□□ 0.08
APOEP02649 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC15.55■□□□□ 0.08
APOEP02649 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.55■□□□□ 0.08
APOEP02649 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.55■□□□□ 0.08
APOEP02649 SF1-209ENST00000433274 2317 ntTSL 2 BASIC15.55■□□□□ 0.08
APOEP02649 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
APOEP02649 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
APOEP02649 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
APOEP02649 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
APOEP02649 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
APOEP02649 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC15.55■□□□□ 0.08
APOEP02649 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
APOEP02649 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
APOEP02649 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
APOEP02649 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC15.55■□□□□ 0.08
APOEP02649 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC15.55■□□□□ 0.08
APOEP02649 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
APOEP02649 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC15.55■□□□□ 0.08
APOEP02649 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
APOEP02649 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
APOEP02649 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
APOEP02649 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
APOEP02649 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
APOEP02649 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
APOEP02649 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
APOEP02649 SERF2-209ENST00000409646 559 ntTSL 4 BASIC15.55■□□□□ 0.08
APOEP02649 HOMER2P2-201ENST00000451621 847 ntBASIC15.55■□□□□ 0.08
APOEP02649 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC15.55■□□□□ 0.08
APOEP02649 RNA5SP412-201ENST00000516234 123 ntBASIC15.55■□□□□ 0.08
APOEP02649 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC15.55■□□□□ 0.08
APOEP02649 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
APOEP02649 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC15.55■□□□□ 0.08
APOEP02649 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC15.55■□□□□ 0.08
APOEP02649 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC15.55■□□□□ 0.08
APOEP02649 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC15.55■□□□□ 0.08
APOEP02649 AC138696.2-201ENST00000607376 223 ntBASIC15.55■□□□□ 0.08
APOEP02649 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
APOEP02649 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC15.55■□□□□ 0.08
APOEP02649 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
APOEP02649 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms