Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
RNF40O75150 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
RNF40O75150 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC16.13■□□□□ 0.17
RNF40O75150 PCDHGB8P-201ENST00000502926 1973 ntBASIC16.13■□□□□ 0.17
RNF40O75150 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC16.13■□□□□ 0.17
RNF40O75150 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RNF40O75150 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
RNF40O75150 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
RNF40O75150 BNIP3P1-202ENST00000550043 1585 ntBASIC16.13■□□□□ 0.17
RNF40O75150 SULT1A1-211ENST00000569554 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RNF40O75150 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RNF40O75150 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
RNF40O75150 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF40O75150 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF40O75150 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
RNF40O75150 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF40O75150 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF40O75150 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF40O75150 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF40O75150 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RNF40O75150 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC16.12■□□□□ 0.17
RNF40O75150 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
RNF40O75150 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC16.12■□□□□ 0.17
RNF40O75150 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF40O75150 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF40O75150 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF40O75150 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RNF40O75150 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF40O75150 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF40O75150 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF40O75150 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
RNF40O75150 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RNF40O75150 ACTBP11-201ENST00000436287 1126 ntBASIC16.12■□□□□ 0.17
RNF40O75150 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF40O75150 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
RNF40O75150 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC16.12■□□□□ 0.17
RNF40O75150 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC16.12■□□□□ 0.17
RNF40O75150 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC16.12■□□□□ 0.17
RNF40O75150 USB1-203ENST00000539737 1212 ntTSL 2 BASIC16.12■□□□□ 0.17
RNF40O75150 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.12■□□□□ 0.17
RNF40O75150 AL583810.1-201ENST00000553344 1045 ntBASIC16.12■□□□□ 0.17
RNF40O75150 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC16.12■□□□□ 0.17
RNF40O75150 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.12■□□□□ 0.17
RNF40O75150 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC16.12■□□□□ 0.17
RNF40O75150 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF40O75150 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF40O75150 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.12■□□□□ 0.17
RNF40O75150 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF40O75150 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC16.12■□□□□ 0.17
RNF40O75150 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF40O75150 MST1P2-201ENST00000457982 2291 ntBASIC16.12■□□□□ 0.17
RNF40O75150 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF40O75150 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RNF40O75150 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC16.12■□□□□ 0.17
RNF40O75150 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF40O75150 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
RNF40O75150 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC16.12■□□□□ 0.17
RNF40O75150 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF40O75150 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
RNF40O75150 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF40O75150 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC16.11■□□□□ 0.17
RNF40O75150 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RNF40O75150 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC16.11■□□□□ 0.17
RNF40O75150 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF40O75150 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF40O75150 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
RNF40O75150 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF40O75150 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF40O75150 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC16.11■□□□□ 0.17
RNF40O75150 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC16.11■□□□□ 0.17
RNF40O75150 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.11■□□□□ 0.17
RNF40O75150 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RNF40O75150 AC126335.2-201ENST00000623362 4637 ntBASIC16.11■□□□□ 0.17
RNF40O75150 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC16.11■□□□□ 0.17
RNF40O75150 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF40O75150 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF40O75150 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC16.11■□□□□ 0.17
RNF40O75150 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF40O75150 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC16.11■□□□□ 0.17
RNF40O75150 RPL28-203ENST00000428193 573 ntTSL 2 BASIC16.11■□□□□ 0.17
RNF40O75150 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RNF40O75150 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
RNF40O75150 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RNF40O75150 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
RNF40O75150 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
RNF40O75150 ETFRF1-205ENST00000555711 783 ntTSL 3 BASIC16.11■□□□□ 0.17
RNF40O75150 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.11■□□□□ 0.17
RNF40O75150 RPL28-207ENST00000558815 616 ntTSL 2 BASIC16.11■□□□□ 0.17
RNF40O75150 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC16.11■□□□□ 0.17
RNF40O75150 AC137695.1-201ENST00000604126 489 ntBASIC16.11■□□□□ 0.17
RNF40O75150 AL606495.2-201ENST00000605867 535 ntBASIC16.11■□□□□ 0.17
RNF40O75150 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC16.11■□□□□ 0.17
RNF40O75150 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC16.11■□□□□ 0.17
RNF40O75150 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF40O75150 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF40O75150 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RNF40O75150 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC16.11■□□□□ 0.17
RNF40O75150 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
RNF40O75150 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF40O75150 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms