Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC11.98□□□□□ -0.49
HMGB3O15347 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC11.98□□□□□ -0.49
HMGB3O15347 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC11.98□□□□□ -0.49
HMGB3O15347 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC11.98□□□□□ -0.49
HMGB3O15347 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC11.98□□□□□ -0.49
HMGB3O15347 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC11.98□□□□□ -0.49
HMGB3O15347 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC11.98□□□□□ -0.49
HMGB3O15347 RIPK4-201ENST00000332512 3889 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC11.98□□□□□ -0.49
HMGB3O15347 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC11.98□□□□□ -0.49
HMGB3O15347 SYS1-203ENST00000414310 795 ntTSL 3 BASIC11.98□□□□□ -0.49
HMGB3O15347 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
HMGB3O15347 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC11.98□□□□□ -0.49
HMGB3O15347 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC11.98□□□□□ -0.49
HMGB3O15347 MAL2-202ENST00000531508 892 ntTSL 3 BASIC11.98□□□□□ -0.49
HMGB3O15347 KRT19P2-202ENST00000557173 1012 ntBASIC11.98□□□□□ -0.49
HMGB3O15347 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC11.98□□□□□ -0.49
HMGB3O15347 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 NAA38-207ENST00000576861 556 ntTSL 3 BASIC11.98□□□□□ -0.49
HMGB3O15347 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC11.98□□□□□ -0.49
HMGB3O15347 NKG7-205ENST00000600427 520 ntTSL 3 BASIC11.98□□□□□ -0.49
HMGB3O15347 AL031008.1-201ENST00000619963 541 ntBASIC11.98□□□□□ -0.49
HMGB3O15347 AC012313.10-201ENST00000623509 926 ntBASIC11.98□□□□□ -0.49
HMGB3O15347 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC11.98□□□□□ -0.49
HMGB3O15347 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC11.98□□□□□ -0.49
HMGB3O15347 AL365181.3-201ENST00000605886 3222 ntBASIC11.98□□□□□ -0.49
HMGB3O15347 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
HMGB3O15347 ZFAT-209ENST00000520727 4686 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
HMGB3O15347 C1orf167-202ENST00000433342 4545 ntAPPRIS P5 TSL 5 BASIC11.98□□□□□ -0.49
HMGB3O15347 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC11.98□□□□□ -0.49
HMGB3O15347 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 AC012617.1-204ENST00000586340 2305 ntBASIC11.98□□□□□ -0.49
HMGB3O15347 GPR35-205ENST00000438013 3821 ntAPPRIS P3 BASIC11.98□□□□□ -0.49
HMGB3O15347 SIN3A-202ENST00000394947 6737 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 MFF-204ENST00000353339 2186 ntTSL 5 BASIC11.98□□□□□ -0.49
HMGB3O15347 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC11.98□□□□□ -0.49
HMGB3O15347 ATP7B-203ENST00000400366 6304 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 INTS5-201ENST00000330574 3285 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
HMGB3O15347 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC11.97□□□□□ -0.49
HMGB3O15347 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 TP53INP2-202ENST00000374810 4184 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC11.97□□□□□ -0.49
HMGB3O15347 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 KANSL1-208ENST00000574590 5147 ntAPPRIS ALT1 TSL 2 BASIC11.97□□□□□ -0.49
HMGB3O15347 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
HMGB3O15347 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 GRN-214ENST00000589265 1632 ntTSL 5 BASIC11.97□□□□□ -0.49
HMGB3O15347 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 COL18A1-AS1-201ENST00000397787 3425 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 FN1-207ENST00000421182 8103 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC11.97□□□□□ -0.49
HMGB3O15347 SON-202ENST00000356577 8813 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 ZNF473-205ENST00000595661 4828 ntAPPRIS P3 TSL 5 BASIC11.97□□□□□ -0.49
HMGB3O15347 TMEM164-204ENST00000372073 5567 ntAPPRIS P3 TSL 5 BASIC11.97□□□□□ -0.49
HMGB3O15347 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
HMGB3O15347 FAM220BP-201ENST00000377689 816 ntBASIC11.97□□□□□ -0.49
HMGB3O15347 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 CSF3-203ENST00000394148 622 ntTSL 3 BASIC11.97□□□□□ -0.49
HMGB3O15347 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC11.97□□□□□ -0.49
HMGB3O15347 AC142381.1-201ENST00000426099 345 ntBASIC11.97□□□□□ -0.49
HMGB3O15347 UPK3BP1-201ENST00000428678 509 ntBASIC11.97□□□□□ -0.49
HMGB3O15347 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC11.97□□□□□ -0.49
HMGB3O15347 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC11.97□□□□□ -0.49
HMGB3O15347 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC11.97□□□□□ -0.49
HMGB3O15347 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC11.97□□□□□ -0.49
HMGB3O15347 FXR1-221ENST00000491674 365 ntTSL 2 BASIC11.97□□□□□ -0.49
HMGB3O15347 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC11.97□□□□□ -0.49
HMGB3O15347 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC11.97□□□□□ -0.49
HMGB3O15347 RARRES2P8-201ENST00000566335 367 ntBASIC11.97□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms