Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPHP1O15259 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC18.67■□□□□ 0.58
NPHP1O15259 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPHP1O15259 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NPHP1O15259 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NPHP1O15259 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC18.67■□□□□ 0.58
NPHP1O15259 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
NPHP1O15259 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
NPHP1O15259 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NPHP1O15259 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
NPHP1O15259 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
NPHP1O15259 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC18.67■□□□□ 0.58
NPHP1O15259 AC008723.1-201ENST00000506922 207 ntBASIC18.67■□□□□ 0.58
NPHP1O15259 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC18.67■□□□□ 0.58
NPHP1O15259 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
NPHP1O15259 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
NPHP1O15259 AC008825.2-201ENST00000603374 718 ntBASIC18.67■□□□□ 0.58
NPHP1O15259 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPHP1O15259 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC18.67■□□□□ 0.58
NPHP1O15259 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPHP1O15259 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC18.67■□□□□ 0.58
NPHP1O15259 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NPHP1O15259 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPHP1O15259 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPHP1O15259 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPHP1O15259 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPHP1O15259 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPHP1O15259 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
NPHP1O15259 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NPHP1O15259 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC18.67■□□□□ 0.58
NPHP1O15259 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC18.66■□□□□ 0.58
NPHP1O15259 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC18.66■□□□□ 0.58
NPHP1O15259 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
NPHP1O15259 KRT8P21-201ENST00000430398 1491 ntBASIC18.66■□□□□ 0.58
NPHP1O15259 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPHP1O15259 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
NPHP1O15259 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPHP1O15259 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
NPHP1O15259 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPHP1O15259 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPHP1O15259 NME2-201ENST00000393183 568 ntTSL 2 BASIC18.66■□□□□ 0.58
NPHP1O15259 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPHP1O15259 RPL8P2-201ENST00000430538 502 ntBASIC18.66■□□□□ 0.58
NPHP1O15259 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC18.66■□□□□ 0.58
NPHP1O15259 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
NPHP1O15259 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC18.66■□□□□ 0.58
NPHP1O15259 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC18.66■□□□□ 0.58
NPHP1O15259 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NPHP1O15259 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
NPHP1O15259 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPHP1O15259 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NPHP1O15259 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPHP1O15259 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPHP1O15259 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPHP1O15259 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
NPHP1O15259 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NPHP1O15259 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
NPHP1O15259 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NPHP1O15259 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC18.66■□□□□ 0.58
NPHP1O15259 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPHP1O15259 AC105250.1-201ENST00000509378 2057 ntBASIC18.65■□□□□ 0.58
NPHP1O15259 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NPHP1O15259 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
NPHP1O15259 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NPHP1O15259 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NPHP1O15259 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC18.65■□□□□ 0.58
NPHP1O15259 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC18.65■□□□□ 0.58
NPHP1O15259 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
NPHP1O15259 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
NPHP1O15259 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
NPHP1O15259 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NPHP1O15259 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC18.65■□□□□ 0.58
NPHP1O15259 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC18.65■□□□□ 0.58
NPHP1O15259 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
NPHP1O15259 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
NPHP1O15259 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NPHP1O15259 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC18.65■□□□□ 0.58
NPHP1O15259 AP000356.3-201ENST00000382243 753 ntBASIC18.65■□□□□ 0.58
NPHP1O15259 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
NPHP1O15259 DNAJB1P1-201ENST00000429417 1024 ntBASIC18.65■□□□□ 0.58
NPHP1O15259 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC18.65■□□□□ 0.58
NPHP1O15259 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NPHP1O15259 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC18.65■□□□□ 0.58
NPHP1O15259 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC18.65■□□□□ 0.58
NPHP1O15259 WDR7-208ENST00000589935 544 ntTSL 4 BASIC18.65■□□□□ 0.58
NPHP1O15259 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC18.65■□□□□ 0.58
NPHP1O15259 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC18.65■□□□□ 0.58
NPHP1O15259 AC103810.10-201ENST00000606504 343 ntBASIC18.65■□□□□ 0.58
NPHP1O15259 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
NPHP1O15259 AC007718.1-201ENST00000621078 280 ntBASIC18.65■□□□□ 0.58
NPHP1O15259 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC18.65■□□□□ 0.58
NPHP1O15259 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC18.65■□□□□ 0.58
NPHP1O15259 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
NPHP1O15259 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC18.65■□□□□ 0.58
NPHP1O15259 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
NPHP1O15259 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NPHP1O15259 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NPHP1O15259 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
NPHP1O15259 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC18.65■□□□□ 0.58
NPHP1O15259 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms