Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC15.84■□□□□ 0.13
FOXN3O00409 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC15.84■□□□□ 0.13
FOXN3O00409 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
FOXN3O00409 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC15.84■□□□□ 0.13
FOXN3O00409 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXN3O00409 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXN3O00409 OR2I1P-209ENST00000641730 5365 ntBASIC15.84■□□□□ 0.13
FOXN3O00409 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXN3O00409 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
FOXN3O00409 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
FOXN3O00409 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXN3O00409 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXN3O00409 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
FOXN3O00409 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC15.84■□□□□ 0.13
FOXN3O00409 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXN3O00409 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXN3O00409 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC15.84■□□□□ 0.13
FOXN3O00409 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXN3O00409 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
FOXN3O00409 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC15.83■□□□□ 0.13
FOXN3O00409 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
FOXN3O00409 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC15.83■□□□□ 0.13
FOXN3O00409 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
FOXN3O00409 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC15.83■□□□□ 0.13
FOXN3O00409 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
FOXN3O00409 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC15.83■□□□□ 0.13
FOXN3O00409 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC15.83■□□□□ 0.13
FOXN3O00409 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
FOXN3O00409 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
FOXN3O00409 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
FOXN3O00409 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
FOXN3O00409 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXN3O00409 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXN3O00409 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
FOXN3O00409 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXN3O00409 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXN3O00409 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC15.83■□□□□ 0.12
FOXN3O00409 CD8B2-202ENST00000417670 633 ntBASIC15.83■□□□□ 0.12
FOXN3O00409 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
FOXN3O00409 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXN3O00409 PUDPP3-201ENST00000445368 636 ntBASIC15.83■□□□□ 0.12
FOXN3O00409 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
FOXN3O00409 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
FOXN3O00409 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC15.83■□□□□ 0.12
FOXN3O00409 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
FOXN3O00409 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC15.83■□□□□ 0.12
FOXN3O00409 MIR6074-201ENST00000612054 107 ntBASIC15.83■□□□□ 0.12
FOXN3O00409 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC15.83■□□□□ 0.12
FOXN3O00409 AC006453.4-201ENST00000636949 1252 ntBASIC15.83■□□□□ 0.12
FOXN3O00409 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.12
FOXN3O00409 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXN3O00409 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXN3O00409 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXN3O00409 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
FOXN3O00409 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXN3O00409 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXN3O00409 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
FOXN3O00409 AL590440.2-201ENST00000641973 1595 ntBASIC15.83■□□□□ 0.12
FOXN3O00409 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
FOXN3O00409 BANP-203ENST00000393207 2438 ntTSL 2 BASIC15.83■□□□□ 0.12
FOXN3O00409 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXN3O00409 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
FOXN3O00409 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC15.82■□□□□ 0.12
FOXN3O00409 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
FOXN3O00409 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
FOXN3O00409 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXN3O00409 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.82■□□□□ 0.12
FOXN3O00409 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXN3O00409 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC15.82■□□□□ 0.12
FOXN3O00409 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC15.82■□□□□ 0.12
FOXN3O00409 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXN3O00409 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
FOXN3O00409 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
FOXN3O00409 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXN3O00409 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
FOXN3O00409 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC15.82■□□□□ 0.12
FOXN3O00409 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
FOXN3O00409 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
FOXN3O00409 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC15.82■□□□□ 0.12
FOXN3O00409 RPL8-205ENST00000527914 551 ntTSL 3 BASIC15.82■□□□□ 0.12
FOXN3O00409 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC15.82■□□□□ 0.12
FOXN3O00409 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXN3O00409 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC15.82■□□□□ 0.12
FOXN3O00409 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC15.82■□□□□ 0.12
FOXN3O00409 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC15.82■□□□□ 0.12
FOXN3O00409 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC15.82■□□□□ 0.12
FOXN3O00409 CECR7-204ENST00000609932 568 ntTSL 2 BASIC15.82■□□□□ 0.12
FOXN3O00409 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
FOXN3O00409 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
FOXN3O00409 AC105233.6-201ENST00000642093 218 ntBASIC15.82■□□□□ 0.12
FOXN3O00409 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXN3O00409 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXN3O00409 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXN3O00409 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC15.82■□□□□ 0.12
FOXN3O00409 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXN3O00409 AC020910.6-201ENST00000623084 1459 ntBASIC15.82■□□□□ 0.12
FOXN3O00409 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
FOXN3O00409 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
FOXN3O00409 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXN3O00409 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms