Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 ANKRD19P-201ENST00000338192 862 ntBASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 AC026954.1-201ENST00000429771 1293 ntBASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 AC104989.1-201ENST00000519711 778 ntBASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 AP005482.1-201ENST00000563722 1273 ntBASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 RN7SL713P-201ENST00000582127 302 ntBASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 RPS24-214ENST00000613865 538 ntTSL 5 BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 MIR6752-201ENST00000618442 71 ntBASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 AHCYP2-201ENST00000430630 1300 ntBASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 AC015802.1-201ENST00000588104 1449 ntBASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATG4BQ9Y4P1 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 PFN2-215ENST00000497148 743 ntTSL 4 BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 AC119751.2-201ENST00000504529 210 ntBASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 AC133552.6-201ENST00000613406 534 ntBASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 COX11-210ENST00000639671 696 ntBASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 MVK-214ENST00000629016 1591 ntTSL 5 BASIC14.03□□□□□ -0.16
ATG4BQ9Y4P1 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms