Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 RPF1-202ENST00000370656 724 ntTSL 2 BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 APOC3-202ENST00000375345 604 ntTSL 5 BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 OLR1-203ENST00000432556 950 ntTSL 2 BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 CHMP1AP1-201ENST00000445563 662 ntBASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 MIR4741-201ENST00000579822 90 ntBASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 AC009542.2-202ENST00000619004 1067 ntBASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 AC106881.1-201ENST00000605849 3329 ntBASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 RPL13AP20-201ENST00000459725 609 ntBASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 NCK2-206ENST00000522586 490 ntTSL 5 BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 EEF1DP1-201ENST00000585891 896 ntBASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 AC002472.3-201ENST00000640124 621 ntBASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRIM39Q9HCM9 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 AC018442.1-201ENST00000421439 2061 ntBASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 AC007274.1-201ENST00000439805 662 ntBASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 ACR-203ENST00000529621 708 ntTSL 5 BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 AC244157.2-201ENST00000616239 1006 ntBASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 AC026748.1-201ENST00000624349 3251 ntBASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 62.8 ms