Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
ATL3Q6DD88 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATL3Q6DD88 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
ATL3Q6DD88 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ATL3Q6DD88 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATL3Q6DD88 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ATL3Q6DD88 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATL3Q6DD88 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATL3Q6DD88 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATL3Q6DD88 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATL3Q6DD88 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ATL3Q6DD88 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ATL3Q6DD88 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
ATL3Q6DD88 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
ATL3Q6DD88 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATL3Q6DD88 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ATL3Q6DD88 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ATL3Q6DD88 ARSEP1-201ENST00000420443 635 ntBASIC16.89■□□□□ 0.29
ATL3Q6DD88 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.89■□□□□ 0.29
ATL3Q6DD88 AC012441.1-201ENST00000446669 685 ntBASIC16.89■□□□□ 0.29
ATL3Q6DD88 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ATL3Q6DD88 CYMP-203ENST00000474680 1263 ntBASIC16.89■□□□□ 0.29
ATL3Q6DD88 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
ATL3Q6DD88 AC145423.3-201ENST00000615987 467 ntBASIC16.89■□□□□ 0.29
ATL3Q6DD88 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
ATL3Q6DD88 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
ATL3Q6DD88 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
ATL3Q6DD88 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATL3Q6DD88 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC16.89■□□□□ 0.29
ATL3Q6DD88 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATL3Q6DD88 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ATL3Q6DD88 TUBB8P4-201ENST00000511806 1324 ntBASIC16.89■□□□□ 0.29
ATL3Q6DD88 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
ATL3Q6DD88 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATL3Q6DD88 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC16.89■□□□□ 0.29
ATL3Q6DD88 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ATL3Q6DD88 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
ATL3Q6DD88 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATL3Q6DD88 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC16.88■□□□□ 0.29
ATL3Q6DD88 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ATL3Q6DD88 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
ATL3Q6DD88 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
ATL3Q6DD88 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATL3Q6DD88 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATL3Q6DD88 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATL3Q6DD88 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
ATL3Q6DD88 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATL3Q6DD88 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC16.88■□□□□ 0.29
ATL3Q6DD88 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATL3Q6DD88 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC16.88■□□□□ 0.29
ATL3Q6DD88 GGCT-205ENST00000409436 954 ntTSL 3 BASIC16.88■□□□□ 0.29
ATL3Q6DD88 BAATP1-201ENST00000412284 1225 ntBASIC16.88■□□□□ 0.29
ATL3Q6DD88 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC16.88■□□□□ 0.29
ATL3Q6DD88 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC16.88■□□□□ 0.29
ATL3Q6DD88 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC16.88■□□□□ 0.29
ATL3Q6DD88 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.88■□□□□ 0.29
ATL3Q6DD88 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
ATL3Q6DD88 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATL3Q6DD88 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ATL3Q6DD88 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ATL3Q6DD88 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATL3Q6DD88 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC16.88■□□□□ 0.29
ATL3Q6DD88 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC16.88■□□□□ 0.29
ATL3Q6DD88 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC16.88■□□□□ 0.29
ATL3Q6DD88 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ATL3Q6DD88 AC064801.2-201ENST00000625052 1303 ntBASIC16.88■□□□□ 0.29
ATL3Q6DD88 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATL3Q6DD88 AC020910.5-201ENST00000623668 1865 ntBASIC16.88■□□□□ 0.29
ATL3Q6DD88 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC16.88■□□□□ 0.29
ATL3Q6DD88 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATL3Q6DD88 AL138709.1-201ENST00000614840 1693 ntBASIC16.88■□□□□ 0.29
ATL3Q6DD88 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATL3Q6DD88 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC16.88■□□□□ 0.29
ATL3Q6DD88 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATL3Q6DD88 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
ATL3Q6DD88 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATL3Q6DD88 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC16.88■□□□□ 0.29
ATL3Q6DD88 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC16.87■□□□□ 0.29
ATL3Q6DD88 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC16.87■□□□□ 0.29
ATL3Q6DD88 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
ATL3Q6DD88 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC16.87■□□□□ 0.29
ATL3Q6DD88 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC16.87■□□□□ 0.29
ATL3Q6DD88 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATL3Q6DD88 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
ATL3Q6DD88 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms