Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
CX3CR1P49238 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC13.1□□□□□ -0.31
CX3CR1P49238 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC13.1□□□□□ -0.31
CX3CR1P49238 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC13.1□□□□□ -0.31
CX3CR1P49238 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC13.1□□□□□ -0.31
CX3CR1P49238 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CR1P49238 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
CX3CR1P49238 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CR1P49238 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CR1P49238 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC13.1□□□□□ -0.31
CX3CR1P49238 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CR1P49238 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC13.1□□□□□ -0.31
CX3CR1P49238 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CR1P49238 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
CX3CR1P49238 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CR1P49238 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CR1P49238 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CR1P49238 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC13.1□□□□□ -0.31
CX3CR1P49238 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
CX3CR1P49238 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CR1P49238 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CR1P49238 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CR1P49238 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC13.1□□□□□ -0.31
CX3CR1P49238 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC13.1□□□□□ -0.31
CX3CR1P49238 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC13.1□□□□□ -0.31
CX3CR1P49238 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
CX3CR1P49238 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CX3CR1P49238 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
CX3CR1P49238 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CX3CR1P49238 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC13.09□□□□□ -0.31
CX3CR1P49238 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC13.09□□□□□ -0.31
CX3CR1P49238 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.09□□□□□ -0.31
CX3CR1P49238 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC13.09□□□□□ -0.31
CX3CR1P49238 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
CX3CR1P49238 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC13.09□□□□□ -0.31
CX3CR1P49238 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC13.09□□□□□ -0.31
CX3CR1P49238 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
CX3CR1P49238 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 AC007969.1-201ENST00000433675 447 ntBASIC13.09□□□□□ -0.31
CX3CR1P49238 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC13.09□□□□□ -0.31
CX3CR1P49238 AL162726.2-201ENST00000438986 1017 ntBASIC13.09□□□□□ -0.31
CX3CR1P49238 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CX3CR1P49238 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 ELK1P1-201ENST00000485699 580 ntBASIC13.09□□□□□ -0.31
CX3CR1P49238 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC13.09□□□□□ -0.31
CX3CR1P49238 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC13.09□□□□□ -0.31
CX3CR1P49238 ENPP7P5-201ENST00000541031 1031 ntBASIC13.09□□□□□ -0.31
CX3CR1P49238 CDK4-206ENST00000549606 558 ntTSL 2 BASIC13.09□□□□□ -0.31
CX3CR1P49238 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC13.09□□□□□ -0.31
CX3CR1P49238 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC13.09□□□□□ -0.31
CX3CR1P49238 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC13.09□□□□□ -0.31
CX3CR1P49238 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC13.09□□□□□ -0.31
CX3CR1P49238 LINC02560-201ENST00000596379 459 ntBASIC13.09□□□□□ -0.31
CX3CR1P49238 AC008494.3-201ENST00000606615 944 ntBASIC13.09□□□□□ -0.31
CX3CR1P49238 AC027601.5-201ENST00000624065 2482 ntBASIC13.09□□□□□ -0.31
CX3CR1P49238 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
CX3CR1P49238 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
CX3CR1P49238 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 SALL4P5-201ENST00000419001 1760 ntBASIC13.09□□□□□ -0.31
CX3CR1P49238 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CX3CR1P49238 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CX3CR1P49238 AL359183.1-201ENST00000623796 2132 ntBASIC13.09□□□□□ -0.31
CX3CR1P49238 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CX3CR1P49238 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
CX3CR1P49238 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.31
CX3CR1P49238 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.31
CX3CR1P49238 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
CX3CR1P49238 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
CX3CR1P49238 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
CX3CR1P49238 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CX3CR1P49238 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CX3CR1P49238 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
CX3CR1P49238 AL359881.3-201ENST00000602640 1721 ntBASIC13.08□□□□□ -0.32
CX3CR1P49238 PEG13-201ENST00000631594 5667 ntBASIC13.08□□□□□ -0.32
CX3CR1P49238 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC13.08□□□□□ -0.32
CX3CR1P49238 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
CX3CR1P49238 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms