Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC13.85□□□□□ -0.19
COL5A1P20908 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL5A1P20908 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC13.85□□□□□ -0.19
COL5A1P20908 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL5A1P20908 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
COL5A1P20908 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC13.85□□□□□ -0.19
COL5A1P20908 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC13.85□□□□□ -0.19
COL5A1P20908 CICP24-201ENST00000605464 2705 ntBASIC13.85□□□□□ -0.19
COL5A1P20908 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
COL5A1P20908 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL5A1P20908 FGD5P1-202ENST00000614866 2498 ntBASIC13.85□□□□□ -0.19
COL5A1P20908 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL5A1P20908 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC13.85□□□□□ -0.19
COL5A1P20908 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL5A1P20908 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL5A1P20908 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL5A1P20908 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC13.85□□□□□ -0.19
COL5A1P20908 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC13.85□□□□□ -0.19
COL5A1P20908 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL5A1P20908 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL5A1P20908 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL5A1P20908 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC13.85□□□□□ -0.19
COL5A1P20908 AQP7P5-201ENST00000428759 1049 ntBASIC13.85□□□□□ -0.19
COL5A1P20908 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC13.85□□□□□ -0.19
COL5A1P20908 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC13.85□□□□□ -0.19
COL5A1P20908 AQP7P4-201ENST00000447083 1042 ntBASIC13.85□□□□□ -0.19
COL5A1P20908 AQP7P2-201ENST00000453967 1041 ntBASIC13.85□□□□□ -0.19
COL5A1P20908 PPIA-208ENST00000489459 907 ntTSL 2 BASIC13.85□□□□□ -0.19
COL5A1P20908 RN7SL564P-201ENST00000496309 250 ntBASIC13.85□□□□□ -0.19
COL5A1P20908 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC13.85□□□□□ -0.19
COL5A1P20908 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC13.85□□□□□ -0.19
COL5A1P20908 KRT8P2-201ENST00000556193 944 ntBASIC13.85□□□□□ -0.19
COL5A1P20908 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC13.85□□□□□ -0.19
COL5A1P20908 PPIA-210ENST00000620047 827 ntTSL 5 BASIC13.85□□□□□ -0.19
COL5A1P20908 MIR6746-201ENST00000620971 63 ntBASIC13.85□□□□□ -0.19
COL5A1P20908 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC13.85□□□□□ -0.19
COL5A1P20908 AQP7P3-201ENST00000624547 1041 ntBASIC13.85□□□□□ -0.19
COL5A1P20908 FAM45BP-202ENST00000592932 1624 ntBASIC13.85□□□□□ -0.19
COL5A1P20908 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
COL5A1P20908 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL5A1P20908 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC13.85□□□□□ -0.19
COL5A1P20908 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL5A1P20908 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL5A1P20908 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL5A1P20908 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC13.84□□□□□ -0.19
COL5A1P20908 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL5A1P20908 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL5A1P20908 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL5A1P20908 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL5A1P20908 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.84□□□□□ -0.19
COL5A1P20908 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL5A1P20908 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC13.84□□□□□ -0.19
COL5A1P20908 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC13.84□□□□□ -0.19
COL5A1P20908 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL5A1P20908 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL5A1P20908 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL5A1P20908 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL5A1P20908 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC13.84□□□□□ -0.19
COL5A1P20908 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL5A1P20908 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL5A1P20908 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC13.84□□□□□ -0.19
COL5A1P20908 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL5A1P20908 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL5A1P20908 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL5A1P20908 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC13.84□□□□□ -0.19
COL5A1P20908 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL5A1P20908 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC13.84□□□□□ -0.19
COL5A1P20908 AC244197.1-201ENST00000456494 951 ntBASIC13.84□□□□□ -0.19
COL5A1P20908 RN7SL767P-201ENST00000493013 295 ntBASIC13.84□□□□□ -0.19
COL5A1P20908 AC093909.3-201ENST00000504783 336 ntBASIC13.84□□□□□ -0.19
COL5A1P20908 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC13.84□□□□□ -0.19
COL5A1P20908 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL5A1P20908 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC13.84□□□□□ -0.19
COL5A1P20908 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC13.84□□□□□ -0.19
COL5A1P20908 USB1-205ENST00000561743 1135 ntTSL 3 BASIC13.84□□□□□ -0.19
COL5A1P20908 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC13.84□□□□□ -0.19
COL5A1P20908 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL5A1P20908 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL5A1P20908 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
COL5A1P20908 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC13.84□□□□□ -0.19
COL5A1P20908 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC13.84□□□□□ -0.19
COL5A1P20908 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC13.84□□□□□ -0.19
COL5A1P20908 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
COL5A1P20908 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC13.84□□□□□ -0.19
COL5A1P20908 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL5A1P20908 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL5A1P20908 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC13.84□□□□□ -0.19
COL5A1P20908 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC13.84□□□□□ -0.19
COL5A1P20908 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC13.84□□□□□ -0.19
COL5A1P20908 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC13.83□□□□□ -0.19
COL5A1P20908 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
COL5A1P20908 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
COL5A1P20908 AL672207.1-201ENST00000328462 1570 ntBASIC13.83□□□□□ -0.19
COL5A1P20908 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
COL5A1P20908 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC13.83□□□□□ -0.2
COL5A1P20908 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC13.83□□□□□ -0.2
COL5A1P20908 ACTG1P19-201ENST00000418987 1116 ntBASIC13.83□□□□□ -0.2
COL5A1P20908 KRT17P4-201ENST00000429445 819 ntBASIC13.83□□□□□ -0.2
COL5A1P20908 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
COL5A1P20908 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms