Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 HNRNPA1P56-201ENST00000505767 954 ntBASIC20.19■□□□□ 0.82
NPHP4O75161 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP4O75161 AC140847.2-201ENST00000545923 501 ntTSL 3 BASIC20.19■□□□□ 0.82
NPHP4O75161 AC093510.1-202ENST00000546238 442 ntTSL 3 BASIC20.19■□□□□ 0.82
NPHP4O75161 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC20.19■□□□□ 0.82
NPHP4O75161 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP4O75161 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC20.19■□□□□ 0.82
NPHP4O75161 CHRNA1-205ENST00000409542 1460 ntTSL 3 BASIC20.19■□□□□ 0.82
NPHP4O75161 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
NPHP4O75161 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP4O75161 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP4O75161 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP4O75161 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC20.19■□□□□ 0.82
NPHP4O75161 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP4O75161 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP4O75161 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC20.19■□□□□ 0.82
NPHP4O75161 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
NPHP4O75161 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP4O75161 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC20.19■□□□□ 0.82
NPHP4O75161 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP4O75161 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP4O75161 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC20.19■□□□□ 0.82
NPHP4O75161 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC20.19■□□□□ 0.82
NPHP4O75161 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
NPHP4O75161 CYP2T1P-202ENST00000641596 2535 ntBASIC20.19■□□□□ 0.82
NPHP4O75161 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC20.19■□□□□ 0.82
NPHP4O75161 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
NPHP4O75161 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
NPHP4O75161 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP4O75161 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP4O75161 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
NPHP4O75161 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP4O75161 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC20.19■□□□□ 0.82
NPHP4O75161 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
NPHP4O75161 HNRNPA1P21-201ENST00000424115 961 ntBASIC20.19■□□□□ 0.82
NPHP4O75161 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC20.19■□□□□ 0.82
NPHP4O75161 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC20.19■□□□□ 0.82
NPHP4O75161 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC20.19■□□□□ 0.82
NPHP4O75161 AC093300.1-201ENST00000510368 1201 ntBASIC20.19■□□□□ 0.82
NPHP4O75161 AC100858.1-201ENST00000514059 1228 ntBASIC20.19■□□□□ 0.82
NPHP4O75161 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP4O75161 ACY3-202ENST00000529256 933 ntTSL 3 BASIC20.19■□□□□ 0.82
NPHP4O75161 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC20.19■□□□□ 0.82
NPHP4O75161 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC20.19■□□□□ 0.82
NPHP4O75161 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC20.19■□□□□ 0.82
NPHP4O75161 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP4O75161 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC20.19■□□□□ 0.82
NPHP4O75161 AL512324.3-201ENST00000619383 882 ntBASIC20.19■□□□□ 0.82
NPHP4O75161 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
NPHP4O75161 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC20.18■□□□□ 0.82
NPHP4O75161 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP4O75161 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
NPHP4O75161 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
NPHP4O75161 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP4O75161 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP4O75161 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
NPHP4O75161 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP4O75161 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP4O75161 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
NPHP4O75161 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC20.18■□□□□ 0.82
NPHP4O75161 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP4O75161 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP4O75161 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC20.18■□□□□ 0.82
NPHP4O75161 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP4O75161 PYM1-203ENST00000408946 1226 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP4O75161 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC20.18■□□□□ 0.82
NPHP4O75161 PILRA-205ENST00000453419 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP4O75161 TIMMDC1-207ENST00000493694 710 ntTSL 2 BASIC20.18■□□□□ 0.82
NPHP4O75161 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC20.18■□□□□ 0.82
NPHP4O75161 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC20.18■□□□□ 0.82
NPHP4O75161 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC20.18■□□□□ 0.82
NPHP4O75161 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP4O75161 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC20.18■□□□□ 0.82
NPHP4O75161 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC20.18■□□□□ 0.82
NPHP4O75161 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
NPHP4O75161 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC20.18■□□□□ 0.82
NPHP4O75161 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
NPHP4O75161 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP4O75161 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC20.18■□□□□ 0.82
NPHP4O75161 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
NPHP4O75161 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP4O75161 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
NPHP4O75161 AP005117.1-202ENST00000581724 1908 ntBASIC20.17■□□□□ 0.82
NPHP4O75161 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP4O75161 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC20.17■□□□□ 0.82
NPHP4O75161 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
NPHP4O75161 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP4O75161 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP4O75161 AC079328.2-201ENST00000561241 3354 ntBASIC20.17■□□□□ 0.82
NPHP4O75161 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
NPHP4O75161 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP4O75161 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC20.17■□□□□ 0.82
NPHP4O75161 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP4O75161 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC20.17■□□□□ 0.82
NPHP4O75161 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP4O75161 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC20.17■□□□□ 0.82
NPHP4O75161 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
NPHP4O75161 GGTLC4P-201ENST00000402176 664 ntBASIC20.17■□□□□ 0.82
NPHP4O75161 ZNF877P-201ENST00000437614 612 ntBASIC20.17■□□□□ 0.82
NPHP4O75161 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms