Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CACNA1FO60840 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC18.23■□□□□ 0.51
CACNA1FO60840 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC18.23■□□□□ 0.51
CACNA1FO60840 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
CACNA1FO60840 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC18.23■□□□□ 0.51
CACNA1FO60840 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CACNA1FO60840 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CACNA1FO60840 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CACNA1FO60840 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CACNA1FO60840 EEF1DP2-201ENST00000433698 843 ntBASIC18.23■□□□□ 0.51
CACNA1FO60840 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CACNA1FO60840 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC18.23■□□□□ 0.51
CACNA1FO60840 RHOQP1-201ENST00000555758 579 ntBASIC18.23■□□□□ 0.51
CACNA1FO60840 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC18.23■□□□□ 0.51
CACNA1FO60840 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CACNA1FO60840 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CACNA1FO60840 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CACNA1FO60840 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC18.23■□□□□ 0.51
CACNA1FO60840 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CACNA1FO60840 SLC9A7P1-201ENST00000554295 3311 ntBASIC18.23■□□□□ 0.51
CACNA1FO60840 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CACNA1FO60840 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC18.23■□□□□ 0.51
CACNA1FO60840 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
CACNA1FO60840 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC18.23■□□□□ 0.51
CACNA1FO60840 AC016397.2-201ENST00000624848 1985 ntBASIC18.22■□□□□ 0.51
CACNA1FO60840 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC18.22■□□□□ 0.51
CACNA1FO60840 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 SUPT4H1P2-201ENST00000501248 353 ntBASIC18.22■□□□□ 0.51
CACNA1FO60840 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC18.22■□□□□ 0.51
CACNA1FO60840 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC18.22■□□□□ 0.51
CACNA1FO60840 NAT9-211ENST00000580632 799 ntTSL 3 BASIC18.22■□□□□ 0.51
CACNA1FO60840 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC18.22■□□□□ 0.51
CACNA1FO60840 AC106872.11-201ENST00000605838 421 ntBASIC18.22■□□□□ 0.51
CACNA1FO60840 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC18.22■□□□□ 0.51
CACNA1FO60840 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC18.22■□□□□ 0.51
CACNA1FO60840 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 TUBB4AP1-201ENST00000450755 1325 ntBASIC18.22■□□□□ 0.51
CACNA1FO60840 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC18.22■□□□□ 0.51
CACNA1FO60840 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC18.22■□□□□ 0.51
CACNA1FO60840 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
CACNA1FO60840 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 AC239868.1-201ENST00000369385 493 ntBASIC18.22■□□□□ 0.51
CACNA1FO60840 UFM1-202ENST00000379649 846 ntTSL 4 BASIC18.22■□□□□ 0.51
CACNA1FO60840 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
CACNA1FO60840 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC18.22■□□□□ 0.51
CACNA1FO60840 RN7SL81P-201ENST00000493781 261 ntBASIC18.22■□□□□ 0.51
CACNA1FO60840 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CACNA1FO60840 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC18.22■□□□□ 0.51
CACNA1FO60840 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC18.22■□□□□ 0.51
CACNA1FO60840 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
CACNA1FO60840 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC18.22■□□□□ 0.51
CACNA1FO60840 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC18.22■□□□□ 0.51
CACNA1FO60840 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC18.22■□□□□ 0.51
CACNA1FO60840 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1FO60840 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
CACNA1FO60840 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC18.21■□□□□ 0.51
CACNA1FO60840 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CACNA1FO60840 AC067931.2-201ENST00000623655 2003 ntBASIC18.21■□□□□ 0.51
CACNA1FO60840 AL591122.2-201ENST00000624125 1853 ntBASIC18.21■□□□□ 0.51
CACNA1FO60840 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CACNA1FO60840 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CACNA1FO60840 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CACNA1FO60840 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CACNA1FO60840 HMGA1P1-201ENST00000415560 1062 ntBASIC18.21■□□□□ 0.51
CACNA1FO60840 POU5F1P2-201ENST00000521750 823 ntBASIC18.21■□□□□ 0.51
CACNA1FO60840 AC134698.3-201ENST00000523880 214 ntBASIC18.21■□□□□ 0.51
CACNA1FO60840 MIR3907-201ENST00000579424 151 ntBASIC18.21■□□□□ 0.51
CACNA1FO60840 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC18.21■□□□□ 0.51
CACNA1FO60840 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CACNA1FO60840 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CACNA1FO60840 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CACNA1FO60840 AC005089.1-201ENST00000619486 2241 ntBASIC18.21■□□□□ 0.51
CACNA1FO60840 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC18.21■□□□□ 0.51
CACNA1FO60840 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
CACNA1FO60840 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC18.21■□□□□ 0.51
CACNA1FO60840 TBC1D3J-201ENST00000620719 1426 ntBASIC18.21■□□□□ 0.51
CACNA1FO60840 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms