Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 APOA1-205ENST00000375329 927 ntTSL 2 BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 AL139094.1-201ENST00000405549 1188 ntBASIC12.05□□□□□ -0.48
FOXA2Q9Y261 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 AL596325.1-201ENST00000563991 1082 ntBASIC12.05□□□□□ -0.48
FOXA2Q9Y261 AP001063.1-201ENST00000568332 529 ntBASIC12.05□□□□□ -0.48
FOXA2Q9Y261 AC009486.1-201ENST00000569860 813 ntBASIC12.05□□□□□ -0.48
FOXA2Q9Y261 IFT20-206ENST00000578122 834 ntTSL 2 BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 IFT20-208ENST00000578985 831 ntTSL 3 BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 LINC02084-201ENST00000606069 1096 ntBASIC12.05□□□□□ -0.48
FOXA2Q9Y261 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 AC005840.4-201ENST00000541242 2494 ntBASIC12.05□□□□□ -0.48
FOXA2Q9Y261 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 CU639417.3-201ENST00000624240 1404 ntBASIC12.04□□□□□ -0.48
FOXA2Q9Y261 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 AC022616.1-201ENST00000518688 554 ntBASIC12.04□□□□□ -0.48
FOXA2Q9Y261 AP005018.1-201ENST00000525475 301 ntBASIC12.04□□□□□ -0.48
FOXA2Q9Y261 POLE2-203ENST00000553805 496 ntTSL 2 BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 AC105233.6-201ENST00000642093 218 ntBASIC12.04□□□□□ -0.48
FOXA2Q9Y261 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 TNN-203ENST00000622870 3719 ntTSL 5 BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA2Q9Y261 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms