Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 AC009093.10-201ENST00000641956 1442 ntBASIC14.54□□□□□ -0.08
COL25A1Q9BXS0 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL25A1Q9BXS0 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL25A1Q9BXS0 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL25A1Q9BXS0 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL25A1Q9BXS0 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL25A1Q9BXS0 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.54□□□□□ -0.08
COL25A1Q9BXS0 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL25A1Q9BXS0 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
COL25A1Q9BXS0 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL25A1Q9BXS0 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.54□□□□□ -0.08
COL25A1Q9BXS0 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC14.54□□□□□ -0.08
COL25A1Q9BXS0 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC14.54□□□□□ -0.08
COL25A1Q9BXS0 GNE-204ENST00000539208 2190 ntTSL 2 BASIC14.54□□□□□ -0.08
COL25A1Q9BXS0 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL25A1Q9BXS0 AC013726.1-201ENST00000563747 2285 ntBASIC14.54□□□□□ -0.08
COL25A1Q9BXS0 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC14.54□□□□□ -0.08
COL25A1Q9BXS0 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL25A1Q9BXS0 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
COL25A1Q9BXS0 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
COL25A1Q9BXS0 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
COL25A1Q9BXS0 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL25A1Q9BXS0 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
COL25A1Q9BXS0 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 MIR4435-2HG-201ENST00000308604 552 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 AC004112.1-201ENST00000431064 561 ntTSL 3 BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 NME6-211ENST00000447314 621 ntTSL 3 BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 EEF1GP1-201ENST00000457231 1299 ntBASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 AC022424.2-201ENST00000514848 454 ntTSL 2 BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 VPS18-202ENST00000558474 873 ntTSL 3 BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 MSRB1-205ENST00000564908 550 ntTSL 3 BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 USE1-207ENST00000596136 637 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 AL669831.3-208ENST00000634337 891 ntTSL 5 BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 AC005052.1-201ENST00000625181 2492 ntBASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
COL25A1Q9BXS0 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL25A1Q9BXS0 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
COL25A1Q9BXS0 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.52□□□□□ -0.08
COL25A1Q9BXS0 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC14.52□□□□□ -0.08
COL25A1Q9BXS0 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL25A1Q9BXS0 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC14.52□□□□□ -0.08
COL25A1Q9BXS0 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL25A1Q9BXS0 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL25A1Q9BXS0 DRD2-204ENST00000538967 1493 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.08
COL25A1Q9BXS0 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL25A1Q9BXS0 RBMS3-210ENST00000456853 1394 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL25A1Q9BXS0 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC14.52□□□□□ -0.08
COL25A1Q9BXS0 DHRS12-202ENST00000280056 1324 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL25A1Q9BXS0 RNF181-201ENST00000306368 569 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL25A1Q9BXS0 AC068631.1-228ENST00000354642 742 ntTSL 5 BASIC14.52□□□□□ -0.09
COL25A1Q9BXS0 SRSF9P1-201ENST00000399149 530 ntBASIC14.52□□□□□ -0.09
COL25A1Q9BXS0 MRPS16P3-201ENST00000415961 374 ntBASIC14.52□□□□□ -0.09
COL25A1Q9BXS0 AL359915.1-201ENST00000457719 898 ntTSL 2 BASIC14.52□□□□□ -0.09
COL25A1Q9BXS0 AC138781.1-201ENST00000501322 505 ntTSL 3 BASIC14.52□□□□□ -0.09
COL25A1Q9BXS0 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC14.52□□□□□ -0.09
COL25A1Q9BXS0 KLF17P1-201ENST00000547105 1126 ntBASIC14.52□□□□□ -0.09
COL25A1Q9BXS0 AL359219.1-201ENST00000556311 934 ntBASIC14.52□□□□□ -0.09
COL25A1Q9BXS0 TTC39A-AS1-201ENST00000564479 812 ntTSL 3 BASIC14.52□□□□□ -0.09
COL25A1Q9BXS0 CD276-217ENST00000564751 951 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL25A1Q9BXS0 ZNF677-210ENST00000601413 706 ntTSL 2 BASIC14.52□□□□□ -0.09
COL25A1Q9BXS0 IGHD-202ENST00000613640 1155 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
COL25A1Q9BXS0 IL4R-219ENST00000628578 201 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL25A1Q9BXS0 MVK-217ENST00000639206 367 ntTSL 5 BASIC14.52□□□□□ -0.09
COL25A1Q9BXS0 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC14.52□□□□□ -0.09
COL25A1Q9BXS0 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL25A1Q9BXS0 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC14.52□□□□□ -0.09
COL25A1Q9BXS0 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL25A1Q9BXS0 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
COL25A1Q9BXS0 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL25A1Q9BXS0 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms