Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 GREB1-204ENST00000381486 8484 ntAPPRIS P1 TSL 5 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 LYRM9-202ENST00000379103 1685 ntAPPRIS P1 TSL 3 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 PDXDC2P-NPIPB14P-205ENST00000531894 4184 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 DNAJC30-201ENST00000395176 2485 ntAPPRIS P1 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 ZIK1-202ENST00000536878 4144 ntAPPRIS ALT2 TSL 2 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 AL359845.1-201ENST00000458202 1648 ntBASIC9.16□□□□□ -0.94
LINC00643Q86TS7 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 DSN1-204ENST00000426836 2441 ntAPPRIS P3 TSL 2 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 PARG-207ENST00000616448 3197 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 TRAPPC2L-211ENST00000565504 3102 ntTSL 2 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 PGM3-201ENST00000283977 2219 ntTSL 5 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 CAMK2B-209ENST00000395749 4447 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 BCKDK-204ENST00000394951 2164 ntAPPRIS P1 TSL 5 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 SH2D7-202ENST00000409568 2162 ntTSL 5 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 MSH6-215ENST00000622629 4324 ntTSL 5 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 ARMC7-201ENST00000245543 2126 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 PAX7-203ENST00000420770 5538 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 MAT2B-204ENST00000518095 3409 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 KLHL12-203ENST00000367261 3359 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 SEC14L1-202ENST00000430767 5283 ntAPPRIS P3 TSL 2 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 KCNQ3-201ENST00000388996 11510 ntAPPRIS P3 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 AC093724.1-201ENST00000448659 1027 ntBASIC9.16□□□□□ -0.94
LINC00643Q86TS7 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 AC090617.6-201ENST00000572790 443 ntTSL 3 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 AC010331.1-201ENST00000611423 582 ntBASIC9.16□□□□□ -0.94
LINC00643Q86TS7 CABP2-204ENST00000636477 941 ntTSL 5 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 MYC-209ENST00000641252 345 ntBASIC9.16□□□□□ -0.94
LINC00643Q86TS7 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 HJURP-202ENST00000411486 3187 ntAPPRIS P3 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 FBLN1-208ENST00000442170 2531 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 MTHFSD-204ENST00000546093 2451 ntTSL 2 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 CAMKK2-204ENST00000392473 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 CTCFL-204ENST00000422869 2966 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 USB1-207ENST00000563149 1751 ntTSL 2 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 AC006001.3-201ENST00000449307 7092 ntTSL 3 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 DTL-201ENST00000366991 4573 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 ESRRB-204ENST00000509242 2849 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 CYP24A1-203ENST00000395955 2227 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 SV2A-202ENST00000369146 4416 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 PCF11-201ENST00000298281 7677 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 BCORL1-205ENST00000540052 7127 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 LAIR1-204ENST00000391743 2735 ntAPPRIS ALT2 TSL 2 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 NFATC4-209ENST00000553879 2707 ntAPPRIS ALT2 TSL 2 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 AC091170.1-201ENST00000582983 2190 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 CAPN13-201ENST00000295055 2683 ntAPPRIS P1 TSL 5 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 GNB5-203ENST00000396335 2678 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 CSTF2-203ENST00000415585 2074 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 ZFYVE19-209ENST00000564258 2059 ntTSL 2 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 OSBP2-208ENST00000437268 3580 ntTSL 2 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 IQSEC1-204ENST00000613206 3582 ntTSL 2 BASIC9.16□□□□□ -0.94
LINC00643Q86TS7 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 ZNF646-201ENST00000300850 6892 ntAPPRIS P2 TSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 SEMA6D-206ENST00000389428 5874 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 AC019205.2-203ENST00000421315 3362 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 AL691432.1-201ENST00000596308 1422 ntBASIC9.15□□□□□ -0.94
LINC00643Q86TS7 BTBD9-201ENST00000314100 8486 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 ENOSF1-203ENST00000383578 4188 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 SLA2-201ENST00000262866 2757 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 GJB5-201ENST00000338513 1355 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 PES1-205ENST00000405677 2708 ntTSL 2 BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 YTHDF2-208ENST00000541996 2719 ntTSL 2 BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 HMBOX1-203ENST00000397358 4082 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 PISD-202ENST00000382151 2669 ntAPPRIS P2 TSL 5 BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 SDR9C7-201ENST00000293502 1765 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 CDH1-212ENST00000611625 4878 ntTSL 5 BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC9.15□□□□□ -0.94
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms