Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
PKNOX1P55347 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
PKNOX1P55347 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PKNOX1P55347 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.64□□□□□ -0.07
PKNOX1P55347 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PKNOX1P55347 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PKNOX1P55347 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.64□□□□□ -0.07
PKNOX1P55347 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
PKNOX1P55347 ABR-205ENST00000544583 5595 ntTSL 2 BASIC14.64□□□□□ -0.07
PKNOX1P55347 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC14.64□□□□□ -0.07
PKNOX1P55347 KRT8P14-201ENST00000414254 1442 ntBASIC14.64□□□□□ -0.07
PKNOX1P55347 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PKNOX1P55347 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC14.64□□□□□ -0.07
PKNOX1P55347 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC14.64□□□□□ -0.07
PKNOX1P55347 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PKNOX1P55347 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.64□□□□□ -0.07
PKNOX1P55347 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC14.64□□□□□ -0.07
PKNOX1P55347 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
PKNOX1P55347 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
PKNOX1P55347 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PKNOX1P55347 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PKNOX1P55347 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 USP4-203ENST00000415188 1454 ntTSL 3 BASIC14.63□□□□□ -0.07
PKNOX1P55347 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
PKNOX1P55347 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
PKNOX1P55347 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
PKNOX1P55347 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
PKNOX1P55347 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC14.63□□□□□ -0.07
PKNOX1P55347 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
PKNOX1P55347 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC14.63□□□□□ -0.07
PKNOX1P55347 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
PKNOX1P55347 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.63□□□□□ -0.07
PKNOX1P55347 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
PKNOX1P55347 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC14.63□□□□□ -0.07
PKNOX1P55347 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC14.63□□□□□ -0.07
PKNOX1P55347 AC120045.2-201ENST00000567334 178 ntBASIC14.63□□□□□ -0.07
PKNOX1P55347 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC14.63□□□□□ -0.07
PKNOX1P55347 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC14.63□□□□□ -0.07
PKNOX1P55347 AC004790.1-201ENST00000612686 536 ntBASIC14.63□□□□□ -0.07
PKNOX1P55347 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.63□□□□□ -0.07
PKNOX1P55347 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 MVK-214ENST00000629016 1591 ntTSL 5 BASIC14.63□□□□□ -0.07
PKNOX1P55347 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC14.63□□□□□ -0.07
PKNOX1P55347 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC14.63□□□□□ -0.07
PKNOX1P55347 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC14.63□□□□□ -0.07
PKNOX1P55347 INTS4P2-202ENST00000614726 2019 ntBASIC14.63□□□□□ -0.07
PKNOX1P55347 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC14.63□□□□□ -0.07
PKNOX1P55347 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PKNOX1P55347 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
PKNOX1P55347 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
PKNOX1P55347 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC14.62□□□□□ -0.07
PKNOX1P55347 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PKNOX1P55347 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC14.62□□□□□ -0.07
PKNOX1P55347 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
PKNOX1P55347 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
PKNOX1P55347 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PKNOX1P55347 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PKNOX1P55347 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PKNOX1P55347 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC14.62□□□□□ -0.07
PKNOX1P55347 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
PKNOX1P55347 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PKNOX1P55347 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
PKNOX1P55347 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PKNOX1P55347 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PKNOX1P55347 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
PKNOX1P55347 SPDYE19P-201ENST00000338590 713 ntBASIC14.62□□□□□ -0.07
PKNOX1P55347 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PKNOX1P55347 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
PKNOX1P55347 PNMT-202ENST00000394246 821 ntTSL 2 BASIC14.62□□□□□ -0.07
PKNOX1P55347 B9D1-203ENST00000395615 805 ntTSL 3 BASIC14.62□□□□□ -0.07
PKNOX1P55347 MRPS18AP1-201ENST00000414458 589 ntBASIC14.62□□□□□ -0.07
PKNOX1P55347 AC134915.1-201ENST00000426461 574 ntBASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms