Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC14.38□□□□□ -0.11
FOXA1P55317 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
FOXA1P55317 RNA5SP421-201ENST00000516864 134 ntBASIC14.38□□□□□ -0.11
FOXA1P55317 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC14.38□□□□□ -0.11
FOXA1P55317 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.38□□□□□ -0.11
FOXA1P55317 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA1P55317 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.38□□□□□ -0.11
FOXA1P55317 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC14.38□□□□□ -0.11
FOXA1P55317 INO80C-206ENST00000586489 594 ntTSL 3 BASIC14.38□□□□□ -0.11
FOXA1P55317 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.38□□□□□ -0.11
FOXA1P55317 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC14.38□□□□□ -0.11
FOXA1P55317 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA1P55317 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA1P55317 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA1P55317 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA1P55317 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
FOXA1P55317 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC14.38□□□□□ -0.11
FOXA1P55317 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
FOXA1P55317 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA1P55317 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA1P55317 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA1P55317 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC14.38□□□□□ -0.11
FOXA1P55317 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
FOXA1P55317 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
FOXA1P55317 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 HSPA8P5-201ENST00000456928 2069 ntBASIC14.37□□□□□ -0.11
FOXA1P55317 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC14.37□□□□□ -0.11
FOXA1P55317 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC14.37□□□□□ -0.11
FOXA1P55317 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.37□□□□□ -0.11
FOXA1P55317 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC14.37□□□□□ -0.11
FOXA1P55317 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
FOXA1P55317 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC14.37□□□□□ -0.11
FOXA1P55317 AC093433.1-201ENST00000458048 571 ntBASIC14.37□□□□□ -0.11
FOXA1P55317 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.37□□□□□ -0.11
FOXA1P55317 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 API5-211ENST00000534695 560 ntTSL 5 BASIC14.37□□□□□ -0.11
FOXA1P55317 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 WASH4P-201ENST00000564273 1246 ntBASIC14.37□□□□□ -0.11
FOXA1P55317 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.37□□□□□ -0.11
FOXA1P55317 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC14.37□□□□□ -0.11
FOXA1P55317 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.37□□□□□ -0.11
FOXA1P55317 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC14.37□□□□□ -0.11
FOXA1P55317 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC14.37□□□□□ -0.11
FOXA1P55317 KRT8P24-201ENST00000560290 1559 ntBASIC14.37□□□□□ -0.11
FOXA1P55317 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC14.37□□□□□ -0.11
FOXA1P55317 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 MAPT-IT1-201ENST00000624111 3016 ntBASIC14.37□□□□□ -0.11
FOXA1P55317 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC14.37□□□□□ -0.11
FOXA1P55317 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
FOXA1P55317 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA1P55317 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA1P55317 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC14.36□□□□□ -0.11
FOXA1P55317 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA1P55317 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA1P55317 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC14.36□□□□□ -0.11
FOXA1P55317 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA1P55317 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA1P55317 AL391825.1-201ENST00000457671 1364 ntBASIC14.36□□□□□ -0.11
FOXA1P55317 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC14.36□□□□□ -0.11
FOXA1P55317 AC130686.1-201ENST00000622936 2466 ntBASIC14.36□□□□□ -0.11
FOXA1P55317 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
FOXA1P55317 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA1P55317 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA1P55317 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC14.36□□□□□ -0.11
FOXA1P55317 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA1P55317 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
FOXA1P55317 LSS-211ENST00000522411 2523 ntTSL 2 BASIC14.36□□□□□ -0.11
FOXA1P55317 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
FOXA1P55317 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA1P55317 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA1P55317 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA1P55317 ACKR1-201ENST00000368121 1240 ntBASIC14.36□□□□□ -0.11
FOXA1P55317 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC14.36□□□□□ -0.11
FOXA1P55317 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms