Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
VCPP55072 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VCPP55072 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC15.95■□□□□ 0.14
VCPP55072 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC15.95■□□□□ 0.14
VCPP55072 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VCPP55072 POM121L10P-201ENST00000436994 1285 ntBASIC15.95■□□□□ 0.14
VCPP55072 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.95■□□□□ 0.14
VCPP55072 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VCPP55072 SDHD-202ENST00000525291 790 ntTSL 3 BASIC15.95■□□□□ 0.14
VCPP55072 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC15.95■□□□□ 0.14
VCPP55072 MIR3147-201ENST00000577811 66 ntBASIC15.95■□□□□ 0.14
VCPP55072 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC15.95■□□□□ 0.14
VCPP55072 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC15.95■□□□□ 0.14
VCPP55072 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
VCPP55072 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.95■□□□□ 0.14
VCPP55072 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
VCPP55072 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC15.95■□□□□ 0.14
VCPP55072 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC15.95■□□□□ 0.14
VCPP55072 AGER-206ENST00000375070 1463 ntTSL 5 BASIC15.95■□□□□ 0.14
VCPP55072 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VCPP55072 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VCPP55072 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC15.95■□□□□ 0.14
VCPP55072 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VCPP55072 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VCPP55072 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VCPP55072 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VCPP55072 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VCPP55072 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
VCPP55072 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
VCPP55072 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC15.95■□□□□ 0.14
VCPP55072 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCPP55072 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCPP55072 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCPP55072 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCPP55072 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC15.94■□□□□ 0.14
VCPP55072 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC15.94■□□□□ 0.14
VCPP55072 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
VCPP55072 AC005089.1-201ENST00000619486 2241 ntBASIC15.94■□□□□ 0.14
VCPP55072 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCPP55072 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VCPP55072 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC15.94■□□□□ 0.14
VCPP55072 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
VCPP55072 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
VCPP55072 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCPP55072 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCPP55072 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCPP55072 SDCCAG3P2-201ENST00000326105 1023 ntBASIC15.94■□□□□ 0.14
VCPP55072 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
VCPP55072 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VCPP55072 RN7SL818P-201ENST00000485099 259 ntBASIC15.94■□□□□ 0.14
VCPP55072 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC15.94■□□□□ 0.14
VCPP55072 CFL1-214ENST00000534769 758 ntTSL 2 BASIC15.94■□□□□ 0.14
VCPP55072 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC15.94■□□□□ 0.14
VCPP55072 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.94■□□□□ 0.14
VCPP55072 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.94■□□□□ 0.14
VCPP55072 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC15.94■□□□□ 0.14
VCPP55072 RN7SL725P-201ENST00000606439 259 ntBASIC15.94■□□□□ 0.14
VCPP55072 AC138649.2-201ENST00000615886 705 ntBASIC15.94■□□□□ 0.14
VCPP55072 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCPP55072 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VCPP55072 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC15.94■□□□□ 0.14
VCPP55072 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
VCPP55072 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.94■□□□□ 0.14
VCPP55072 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCPP55072 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCPP55072 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCPP55072 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCPP55072 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCPP55072 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VCPP55072 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCPP55072 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.94■□□□□ 0.14
VCPP55072 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC15.94■□□□□ 0.14
VCPP55072 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCPP55072 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCPP55072 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC15.94■□□□□ 0.14
VCPP55072 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCPP55072 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VCPP55072 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCPP55072 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC15.94■□□□□ 0.14
VCPP55072 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC15.94■□□□□ 0.14
VCPP55072 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC15.93■□□□□ 0.14
VCPP55072 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
VCPP55072 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VCPP55072 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VCPP55072 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VCPP55072 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC15.93■□□□□ 0.14
VCPP55072 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC15.93■□□□□ 0.14
VCPP55072 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VCPP55072 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
VCPP55072 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VCPP55072 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VCPP55072 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
VCPP55072 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
VCPP55072 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VCPP55072 NKAIN1P1-201ENST00000435754 582 ntBASIC15.93■□□□□ 0.14
VCPP55072 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC15.93■□□□□ 0.14
VCPP55072 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC15.93■□□□□ 0.14
VCPP55072 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC15.93■□□□□ 0.14
VCPP55072 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
VCPP55072 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms