Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RBPMS2P1-201ENST00000437762 623 ntBASIC14.23□□□□□ -0.13
MSX2P35548 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
MSX2P35548 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.23□□□□□ -0.13
MSX2P35548 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MSX2P35548 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC14.23□□□□□ -0.13
MSX2P35548 AC093520.2-201ENST00000561830 333 ntBASIC14.23□□□□□ -0.13
MSX2P35548 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MSX2P35548 AC022145.2-201ENST00000598203 171 ntBASIC14.23□□□□□ -0.13
MSX2P35548 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MSX2P35548 FAM197Y3-203ENST00000618346 717 ntBASIC14.23□□□□□ -0.13
MSX2P35548 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC14.23□□□□□ -0.13
MSX2P35548 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.23□□□□□ -0.13
MSX2P35548 AC011498.7-201ENST00000624986 2027 ntBASIC14.23□□□□□ -0.13
MSX2P35548 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX2P35548 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX2P35548 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
MSX2P35548 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
MSX2P35548 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MSX2P35548 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
MSX2P35548 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX2P35548 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC14.23□□□□□ -0.13
MSX2P35548 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX2P35548 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX2P35548 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
MSX2P35548 EML1-203ENST00000334192 4064 ntTSL 5 BASIC14.23□□□□□ -0.13
MSX2P35548 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MSX2P35548 SLC5A5-201ENST00000222248 3576 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX2P35548 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
MSX2P35548 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MSX2P35548 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX2P35548 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX2P35548 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC14.22□□□□□ -0.13
MSX2P35548 HSPA8P5-201ENST00000456928 2069 ntBASIC14.22□□□□□ -0.13
MSX2P35548 AL035456.1-201ENST00000456064 1369 ntBASIC14.22□□□□□ -0.13
MSX2P35548 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
MSX2P35548 AC005014.1-201ENST00000432006 2976 ntBASIC14.22□□□□□ -0.13
MSX2P35548 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC14.22□□□□□ -0.13
MSX2P35548 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC14.22□□□□□ -0.13
MSX2P35548 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC14.22□□□□□ -0.13
MSX2P35548 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC14.22□□□□□ -0.13
MSX2P35548 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
MSX2P35548 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
MSX2P35548 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
MSX2P35548 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
MSX2P35548 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MSX2P35548 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
MSX2P35548 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MSX2P35548 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MSX2P35548 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
MSX2P35548 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC14.22□□□□□ -0.13
MSX2P35548 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
MSX2P35548 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
MSX2P35548 GPS2P2-201ENST00000430745 888 ntBASIC14.22□□□□□ -0.13
MSX2P35548 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.22□□□□□ -0.13
MSX2P35548 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC14.22□□□□□ -0.13
MSX2P35548 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
MSX2P35548 AC004066.1-201ENST00000502488 802 ntBASIC14.22□□□□□ -0.13
MSX2P35548 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.22□□□□□ -0.13
MSX2P35548 TSFM-210ENST00000550559 897 ntTSL 5 BASIC14.22□□□□□ -0.13
MSX2P35548 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
MSX2P35548 AL589739.1-201ENST00000607720 493 ntBASIC14.22□□□□□ -0.13
MSX2P35548 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC14.22□□□□□ -0.13
MSX2P35548 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC14.22□□□□□ -0.13
MSX2P35548 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.22□□□□□ -0.13
MSX2P35548 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
MSX2P35548 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
MSX2P35548 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
MSX2P35548 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
MSX2P35548 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
MSX2P35548 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
MSX2P35548 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MSX2P35548 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
MSX2P35548 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
MSX2P35548 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
MSX2P35548 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC14.21□□□□□ -0.13
MSX2P35548 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC14.21□□□□□ -0.13
MSX2P35548 TCAM1P-207ENST00000485295 1537 ntBASIC14.21□□□□□ -0.13
MSX2P35548 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC14.21□□□□□ -0.13
MSX2P35548 HAL-202ENST00000538703 2637 ntTSL 2 BASIC14.21□□□□□ -0.13
MSX2P35548 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
MSX2P35548 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC14.21□□□□□ -0.13
MSX2P35548 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
MSX2P35548 DDC-213ENST00000617822 1809 ntTSL 3 BASIC14.21□□□□□ -0.13
MSX2P35548 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
MSX2P35548 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
MSX2P35548 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
MSX2P35548 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC14.21□□□□□ -0.13
MSX2P35548 AL080243.2-201ENST00000418783 582 ntBASIC14.21□□□□□ -0.13
MSX2P35548 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC14.21□□□□□ -0.13
MSX2P35548 SPDYE14P-201ENST00000442619 822 ntBASIC14.21□□□□□ -0.13
MSX2P35548 ACTG1P14-201ENST00000446382 1122 ntBASIC14.21□□□□□ -0.13
MSX2P35548 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
MSX2P35548 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
MSX2P35548 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC14.21□□□□□ -0.13
MSX2P35548 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
MSX2P35548 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.21□□□□□ -0.13
MSX2P35548 AC026150.2-201ENST00000564693 1156 ntBASIC14.21□□□□□ -0.13
MSX2P35548 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.21□□□□□ -0.13
MSX2P35548 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC14.21□□□□□ -0.13
MSX2P35548 AC105339.1-204ENST00000636249 355 ntBASIC14.21□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms