Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC9P31274 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
HOXC9P31274 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC19.34■□□□□ 0.69
HOXC9P31274 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC9P31274 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
HOXC9P31274 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC19.34■□□□□ 0.69
HOXC9P31274 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC9P31274 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC19.34■□□□□ 0.69
HOXC9P31274 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC9P31274 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC9P31274 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
HOXC9P31274 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC9P31274 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC19.34■□□□□ 0.69
HOXC9P31274 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
HOXC9P31274 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HOXC9P31274 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HOXC9P31274 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HOXC9P31274 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
HOXC9P31274 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
HOXC9P31274 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC19.33■□□□□ 0.69
HOXC9P31274 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HOXC9P31274 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HOXC9P31274 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
HOXC9P31274 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
HOXC9P31274 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC19.33■□□□□ 0.69
HOXC9P31274 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
HOXC9P31274 BRD7P5-201ENST00000299197 1822 ntBASIC19.33■□□□□ 0.69
HOXC9P31274 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
HOXC9P31274 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HOXC9P31274 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
HOXC9P31274 AC018529.2-202ENST00000611482 3087 ntBASIC19.33■□□□□ 0.69
HOXC9P31274 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXC9P31274 HLA-DMA-203ENST00000395305 777 ntBASIC19.33■□□□□ 0.68
HOXC9P31274 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
HOXC9P31274 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC19.33■□□□□ 0.68
HOXC9P31274 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC19.33■□□□□ 0.68
HOXC9P31274 AC009084.3-201ENST00000623356 437 ntBASIC19.33■□□□□ 0.68
HOXC9P31274 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC19.33■□□□□ 0.68
HOXC9P31274 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXC9P31274 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
HOXC9P31274 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HOXC9P31274 MECR-202ENST00000373791 2416 ntTSL 2 BASIC19.33■□□□□ 0.68
HOXC9P31274 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
HOXC9P31274 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
HOXC9P31274 CYP51A1P3-201ENST00000400072 1428 ntBASIC19.33■□□□□ 0.68
HOXC9P31274 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC19.33■□□□□ 0.68
HOXC9P31274 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC19.33■□□□□ 0.68
HOXC9P31274 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC9P31274 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC9P31274 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC9P31274 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC19.32■□□□□ 0.68
HOXC9P31274 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC9P31274 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC9P31274 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC9P31274 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC19.32■□□□□ 0.68
HOXC9P31274 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
HOXC9P31274 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC19.32■□□□□ 0.68
HOXC9P31274 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC9P31274 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC9P31274 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC9P31274 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
HOXC9P31274 GSN-215ENST00000545652 2428 ntTSL 2 BASIC19.32■□□□□ 0.68
HOXC9P31274 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC9P31274 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC9P31274 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC9P31274 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
HOXC9P31274 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC9P31274 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC9P31274 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC9P31274 AC073869.2-201ENST00000417338 1026 ntBASIC19.32■□□□□ 0.68
HOXC9P31274 AC018463.1-201ENST00000456674 917 ntBASIC19.32■□□□□ 0.68
HOXC9P31274 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC19.32■□□□□ 0.68
HOXC9P31274 AP000911.2-201ENST00000534330 502 ntBASIC19.32■□□□□ 0.68
HOXC9P31274 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
HOXC9P31274 MIR3180-2-201ENST00000581748 88 ntBASIC19.32■□□□□ 0.68
HOXC9P31274 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC19.32■□□□□ 0.68
HOXC9P31274 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
HOXC9P31274 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC19.32■□□□□ 0.68
HOXC9P31274 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC9P31274 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
HOXC9P31274 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC19.32■□□□□ 0.68
HOXC9P31274 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC9P31274 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC19.32■□□□□ 0.68
HOXC9P31274 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC19.32■□□□□ 0.68
HOXC9P31274 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
HOXC9P31274 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC19.31■□□□□ 0.68
HOXC9P31274 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC19.31■□□□□ 0.68
HOXC9P31274 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC19.31■□□□□ 0.68
HOXC9P31274 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HOXC9P31274 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
HOXC9P31274 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
HOXC9P31274 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC19.31■□□□□ 0.68
HOXC9P31274 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HOXC9P31274 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC19.31■□□□□ 0.68
HOXC9P31274 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HOXC9P31274 MIR645-201ENST00000385283 94 ntBASIC19.31■□□□□ 0.68
HOXC9P31274 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC19.31■□□□□ 0.68
HOXC9P31274 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HOXC9P31274 AC012362.1-201ENST00000434906 739 ntBASIC19.31■□□□□ 0.68
HOXC9P31274 LYPLA2P1-203ENST00000447689 696 ntBASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms