Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.13■□□□□ 0.01
COL9A1P20849 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL9A1P20849 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL9A1P20849 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL9A1P20849 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC15.13■□□□□ 0.01
COL9A1P20849 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
COL9A1P20849 RN7SKP230-201ENST00000365642 335 ntBASIC15.13■□□□□ 0.01
COL9A1P20849 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL9A1P20849 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.13■□□□□ 0.01
COL9A1P20849 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL9A1P20849 HLA-DMA-203ENST00000395305 777 ntBASIC15.13■□□□□ 0.01
COL9A1P20849 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL9A1P20849 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
COL9A1P20849 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC15.13■□□□□ 0.01
COL9A1P20849 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC15.13■□□□□ 0.01
COL9A1P20849 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC15.13■□□□□ 0.01
COL9A1P20849 RPL35P9-201ENST00000446059 350 ntBASIC15.13■□□□□ 0.01
COL9A1P20849 DUTP3-201ENST00000450025 415 ntBASIC15.13■□□□□ 0.01
COL9A1P20849 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC15.13■□□□□ 0.01
COL9A1P20849 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC15.13■□□□□ 0.01
COL9A1P20849 MT3-203ENST00000565838 421 ntTSL 3 BASIC15.13■□□□□ 0.01
COL9A1P20849 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL9A1P20849 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC15.13■□□□□ 0.01
COL9A1P20849 POU5F1-207ENST00000606567 1236 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL9A1P20849 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC15.13■□□□□ 0.01
COL9A1P20849 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC15.13■□□□□ 0.01
COL9A1P20849 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL9A1P20849 AC012508.2-201ENST00000567613 1472 ntBASIC15.13■□□□□ 0.01
COL9A1P20849 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL9A1P20849 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC15.13■□□□□ 0.01
COL9A1P20849 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL9A1P20849 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
COL9A1P20849 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC15.13■□□□□ 0.01
COL9A1P20849 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL9A1P20849 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.12■□□□□ 0.01
COL9A1P20849 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL9A1P20849 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL9A1P20849 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL9A1P20849 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC15.12■□□□□ 0.01
COL9A1P20849 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
COL9A1P20849 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC15.12■□□□□ 0.01
COL9A1P20849 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL9A1P20849 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL9A1P20849 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
COL9A1P20849 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC15.12■□□□□ 0.01
COL9A1P20849 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL9A1P20849 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL9A1P20849 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL9A1P20849 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL9A1P20849 AC099398.1-201ENST00000567919 2776 ntBASIC15.12■□□□□ 0.01
COL9A1P20849 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
COL9A1P20849 AC106827.1-201ENST00000366454 431 ntBASIC15.12■□□□□ 0.01
COL9A1P20849 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL9A1P20849 TCEAL5-201ENST00000372680 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL9A1P20849 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL9A1P20849 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
COL9A1P20849 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL9A1P20849 AC136604.1-202ENST00000425471 771 ntBASIC15.12■□□□□ 0.01
COL9A1P20849 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
COL9A1P20849 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
COL9A1P20849 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC15.12■□□□□ 0.01
COL9A1P20849 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC15.12■□□□□ 0.01
COL9A1P20849 RN7SL173P-201ENST00000461853 292 ntBASIC15.12■□□□□ 0.01
COL9A1P20849 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC15.12■□□□□ 0.01
COL9A1P20849 ABCC6P2-201ENST00000526069 590 ntBASIC15.12■□□□□ 0.01
COL9A1P20849 AC008750.2-201ENST00000526996 627 ntTSL 3 BASIC15.12■□□□□ 0.01
COL9A1P20849 GOLGA2P7-209ENST00000560408 745 ntBASIC15.12■□□□□ 0.01
COL9A1P20849 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC15.12■□□□□ 0.01
COL9A1P20849 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL9A1P20849 PLA2G4C-AS1-203ENST00000601950 454 ntTSL 3 BASIC15.12■□□□□ 0.01
COL9A1P20849 AC006483.2-201ENST00000609813 515 ntBASIC15.12■□□□□ 0.01
COL9A1P20849 AC006986.1-201ENST00000612764 241 ntBASIC15.12■□□□□ 0.01
COL9A1P20849 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC15.12■□□□□ 0.01
COL9A1P20849 AP000720.1-201ENST00000625091 483 ntBASIC15.12■□□□□ 0.01
COL9A1P20849 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL9A1P20849 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL9A1P20849 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL9A1P20849 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
COL9A1P20849 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL9A1P20849 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL9A1P20849 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
COL9A1P20849 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
COL9A1P20849 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL9A1P20849 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.12■□□□□ 0.01
COL9A1P20849 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
COL9A1P20849 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL9A1P20849 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL9A1P20849 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL9A1P20849 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC15.11■□□□□ 0.01
COL9A1P20849 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL9A1P20849 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL9A1P20849 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL9A1P20849 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL9A1P20849 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
COL9A1P20849 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.11■□□□□ 0.01
COL9A1P20849 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.11■□□□□ 0.01
COL9A1P20849 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC15.11■□□□□ 0.01
COL9A1P20849 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
COL9A1P20849 COA1-202ENST00000310564 1085 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
COL9A1P20849 NCR1-204ENST00000357397 594 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms