Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 TTTY18-201ENST00000438677 221 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VCANP13611 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.9□□□□□ -0.02
VCANP13611 AL080250.1-203ENST00000607799 747 ntTSL 2 BASIC14.9□□□□□ -0.02
VCANP13611 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC14.9□□□□□ -0.02
VCANP13611 AC241585.2-202ENST00000621798 1015 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VCANP13611 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VCANP13611 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
VCANP13611 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VCANP13611 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
VCANP13611 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC14.89□□□□□ -0.03
VCANP13611 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
VCANP13611 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC14.89□□□□□ -0.03
VCANP13611 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VCANP13611 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
VCANP13611 TAMM41-201ENST00000273037 1297 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VCANP13611 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC14.89□□□□□ -0.03
VCANP13611 HNRNPA1P72-201ENST00000529511 967 ntBASIC14.89□□□□□ -0.03
VCANP13611 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VCANP13611 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC14.89□□□□□ -0.03
VCANP13611 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC14.89□□□□□ -0.03
VCANP13611 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC14.89□□□□□ -0.03
VCANP13611 BRD7P5-201ENST00000299197 1822 ntBASIC14.89□□□□□ -0.03
VCANP13611 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.89□□□□□ -0.03
VCANP13611 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VCANP13611 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VCANP13611 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
VCANP13611 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
VCANP13611 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.89□□□□□ -0.03
VCANP13611 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VCANP13611 Z69733.1-201ENST00000445990 632 ntTSL 3 BASIC14.89□□□□□ -0.03
VCANP13611 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC14.89□□□□□ -0.03
VCANP13611 AC090152.1-202ENST00000518993 1079 ntTSL 3 BASIC14.89□□□□□ -0.03
VCANP13611 PPY-202ENST00000587006 431 ntTSL 3 BASIC14.89□□□□□ -0.03
VCANP13611 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC14.89□□□□□ -0.03
VCANP13611 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC14.89□□□□□ -0.03
VCANP13611 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.89□□□□□ -0.03
VCANP13611 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VCANP13611 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VCANP13611 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VCANP13611 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VCANP13611 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC14.89□□□□□ -0.03
VCANP13611 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
VCANP13611 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC14.89□□□□□ -0.03
VCANP13611 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VCANP13611 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC14.89□□□□□ -0.03
VCANP13611 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VCANP13611 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VCANP13611 CD44-203ENST00000278386 484 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VCANP13611 MRPL48-203ENST00000398483 1058 ntTSL 3 BASIC14.88□□□□□ -0.03
VCANP13611 CRYZL1-205ENST00000399442 612 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VCANP13611 AC011997.1-201ENST00000409845 1032 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VCANP13611 DMKN-211ENST00000436012 848 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
VCANP13611 ALG1L7P-201ENST00000502317 768 ntBASIC14.88□□□□□ -0.03
VCANP13611 BACE1-207ENST00000510630 1236 ntTSL 2 BASIC14.88□□□□□ -0.03
VCANP13611 AC116025.1-201ENST00000575404 415 ntTSL 3 BASIC14.88□□□□□ -0.03
VCANP13611 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC14.88□□□□□ -0.03
VCANP13611 PAX8-AS1-219ENST00000623306 840 ntTSL 5 BASIC14.88□□□□□ -0.03
VCANP13611 AC003102.2-201ENST00000589195 1469 ntBASIC14.88□□□□□ -0.03
VCANP13611 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
VCANP13611 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC14.88□□□□□ -0.03
VCANP13611 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VCANP13611 IP6K2-211ENST00000432678 1309 ntTSL 2 BASIC14.88□□□□□ -0.03
VCANP13611 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VCANP13611 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VCANP13611 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
VCANP13611 RPAIN-202ENST00000381208 1394 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VCANP13611 AP000354.1-201ENST00000396982 456 ntBASIC14.88□□□□□ -0.03
VCANP13611 TOB1-AS1-202ENST00000514358 690 ntTSL 5 BASIC14.88□□□□□ -0.03
VCANP13611 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC14.88□□□□□ -0.03
VCANP13611 FAM69A-204ENST00000615519 865 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VCANP13611 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VCANP13611 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.88□□□□□ -0.03
VCANP13611 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VCANP13611 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
VCANP13611 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VCANP13611 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VCANP13611 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VCANP13611 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VCANP13611 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VCANP13611 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
VCANP13611 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VCANP13611 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC14.88□□□□□ -0.03
VCANP13611 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
VCANP13611 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC14.88□□□□□ -0.03
VCANP13611 LXN-201ENST00000264265 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VCANP13611 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
VCANP13611 WDR54-202ENST00000409791 854 ntTSL 3 BASIC14.88□□□□□ -0.03
VCANP13611 AC092284.1-201ENST00000511386 1289 ntBASIC14.88□□□□□ -0.03
VCANP13611 AC004923.4-201ENST00000532296 739 ntTSL 3 BASIC14.88□□□□□ -0.03
VCANP13611 ZFYVE1-206ENST00000555072 1225 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VCANP13611 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC14.88□□□□□ -0.03
VCANP13611 PAX6-247ENST00000638965 979 ntTSL 5 BASIC14.88□□□□□ -0.03
VCANP13611 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
VCANP13611 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
VCANP13611 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VCANP13611 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VCANP13611 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VCANP13611 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VCANP13611 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
VCANP13611 APOO-201ENST00000379226 1118 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms