Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 AL645608.8-201ENST00000606034 2086 ntBASIC13.42□□□□□ -0.26
CHD8Q9HCK8 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 APOBEC3A-201ENST00000249116 1444 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 FTHL17-201ENST00000359202 813 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 TRPM3-205ENST00000361823 1260 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 AP000354.1-201ENST00000396982 456 ntBASIC13.42□□□□□ -0.26
CHD8Q9HCK8 AL357033.2-201ENST00000430184 739 ntTSL 3 BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 AC133141.1-201ENST00000443015 339 ntBASIC13.42□□□□□ -0.26
CHD8Q9HCK8 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 CYB5D2-202ENST00000573984 495 ntTSL 4 BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 AC011270.2-201ENST00000624293 2550 ntBASIC13.42□□□□□ -0.26
CHD8Q9HCK8 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHD8Q9HCK8 AL365181.1-201ENST00000564032 1828 ntBASIC13.41□□□□□ -0.26
CHD8Q9HCK8 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 SPINK2-201ENST00000248701 613 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 APOO-201ENST00000379226 1118 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 SAT1-201ENST00000379251 801 ntTSL 2 BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 SAT1-202ENST00000379253 909 ntTSL 2 BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 SAT1-203ENST00000379254 868 ntTSL 3 BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 MRPL48-203ENST00000398483 1058 ntTSL 3 BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 AC010551.3-201ENST00000563772 463 ntTSL 5 BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 AL592146.2-201ENST00000565388 444 ntTSL 5 BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 URAHP-205ENST00000610227 398 ntBASIC13.41□□□□□ -0.26
CHD8Q9HCK8 KRTAP10-4-202ENST00000616689 597 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 C12orf45-205ENST00000622317 1078 ntTSL 5 BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 AC010335.3-201ENST00000623767 531 ntBASIC13.41□□□□□ -0.26
CHD8Q9HCK8 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 AC005042.2-201ENST00000449526 510 ntTSL 4 BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 CICP12-201ENST00000455801 843 ntBASIC13.41□□□□□ -0.26
CHD8Q9HCK8 BACE1-207ENST00000510630 1236 ntTSL 2 BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 IMMP1L-215ENST00000534812 612 ntTSL 2 BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
CHD8Q9HCK8 SPC25-201ENST00000282074 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms