Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 AP001267.2-201ENST00000532619 2086 ntBASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 AL645937.2-201ENST00000396808 931 ntBASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 FAM8A4P-201ENST00000435433 1213 ntBASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 POM121L10P-201ENST00000436994 1285 ntBASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 HIST2H2BC-201ENST00000498492 580 ntBASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 PARP8-218ENST00000513738 596 ntTSL 4 BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 NAT9-222ENST00000583476 583 ntTSL 3 BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC144BQ3MJ40 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC144BQ3MJ40 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
CCDC144BQ3MJ40 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC144BQ3MJ40 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC144BQ3MJ40 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
CCDC144BQ3MJ40 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC144BQ3MJ40 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC144BQ3MJ40 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC144BQ3MJ40 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
CCDC144BQ3MJ40 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC144BQ3MJ40 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC144BQ3MJ40 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC144BQ3MJ40 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 CSH2-202ENST00000345366 598 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 TISP43-201ENST00000409793 538 ntTSL 4 BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 REEP1-202ENST00000453231 940 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 ADM-202ENST00000524948 584 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 AC106872.11-201ENST00000605838 421 ntBASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 KRT8P14-201ENST00000414254 1442 ntBASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC144BQ3MJ40 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC17.25■□□□□ 0.35
CCDC144BQ3MJ40 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC144BQ3MJ40 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC144BQ3MJ40 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC144BQ3MJ40 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CCDC144BQ3MJ40 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
CCDC144BQ3MJ40 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC144BQ3MJ40 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms