Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
GFRA1P56159 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
GFRA1P56159 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
GFRA1P56159 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
GFRA1P56159 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
GFRA1P56159 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
GFRA1P56159 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
GFRA1P56159 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
GFRA1P56159 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
GFRA1P56159 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
GFRA1P56159 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
GFRA1P56159 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
GFRA1P56159 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC13.26□□□□□ -0.29
GFRA1P56159 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC13.26□□□□□ -0.29
GFRA1P56159 KRT8P28-201ENST00000433288 1390 ntBASIC13.26□□□□□ -0.29
GFRA1P56159 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC13.26□□□□□ -0.29
GFRA1P56159 AL645933.1-201ENST00000440087 609 ntBASIC13.26□□□□□ -0.29
GFRA1P56159 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC13.26□□□□□ -0.29
GFRA1P56159 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC13.26□□□□□ -0.29
GFRA1P56159 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
GFRA1P56159 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC13.26□□□□□ -0.29
GFRA1P56159 RPL18P13-201ENST00000478088 569 ntBASIC13.26□□□□□ -0.29
GFRA1P56159 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC13.26□□□□□ -0.29
GFRA1P56159 AC106794.1-201ENST00000506935 792 ntBASIC13.26□□□□□ -0.29
GFRA1P56159 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
GFRA1P56159 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC13.26□□□□□ -0.29
GFRA1P56159 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC13.26□□□□□ -0.29
GFRA1P56159 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
GFRA1P56159 USP35-204ENST00000530267 2419 ntTSL 2 BASIC13.26□□□□□ -0.29
GFRA1P56159 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
GFRA1P56159 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC13.26□□□□□ -0.29
GFRA1P56159 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
GFRA1P56159 EID1-202ENST00000560490 584 ntTSL 3 BASIC13.26□□□□□ -0.29
GFRA1P56159 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
GFRA1P56159 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC13.26□□□□□ -0.29
GFRA1P56159 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
GFRA1P56159 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC13.26□□□□□ -0.29
GFRA1P56159 RPL35-206ENST00000629845 340 ntTSL 5 BASIC13.26□□□□□ -0.29
GFRA1P56159 AC068587.8-201ENST00000641239 219 ntBASIC13.26□□□□□ -0.29
GFRA1P56159 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
GFRA1P56159 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
GFRA1P56159 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC13.26□□□□□ -0.29
GFRA1P56159 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
GFRA1P56159 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
GFRA1P56159 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
GFRA1P56159 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
GFRA1P56159 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC13.25□□□□□ -0.29
GFRA1P56159 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC13.25□□□□□ -0.29
GFRA1P56159 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC13.25□□□□□ -0.29
GFRA1P56159 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC13.25□□□□□ -0.29
GFRA1P56159 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC13.25□□□□□ -0.29
GFRA1P56159 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC13.25□□□□□ -0.29
GFRA1P56159 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
GFRA1P56159 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC13.25□□□□□ -0.29
GFRA1P56159 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
GFRA1P56159 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
GFRA1P56159 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
GFRA1P56159 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
GFRA1P56159 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
GFRA1P56159 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
GFRA1P56159 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
GFRA1P56159 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC13.25□□□□□ -0.29
GFRA1P56159 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC13.25□□□□□ -0.29
GFRA1P56159 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
GFRA1P56159 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
GFRA1P56159 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC13.25□□□□□ -0.29
GFRA1P56159 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
GFRA1P56159 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
GFRA1P56159 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
GFRA1P56159 NPPA-201ENST00000376476 728 ntTSL 3 BASIC13.25□□□□□ -0.29
GFRA1P56159 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
GFRA1P56159 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC13.25□□□□□ -0.29
GFRA1P56159 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC13.25□□□□□ -0.29
GFRA1P56159 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
GFRA1P56159 VDAC1P1-201ENST00000439229 848 ntBASIC13.25□□□□□ -0.29
GFRA1P56159 AC104073.2-201ENST00000453737 312 ntBASIC13.25□□□□□ -0.29
GFRA1P56159 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
GFRA1P56159 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC13.25□□□□□ -0.29
GFRA1P56159 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC13.25□□□□□ -0.29
GFRA1P56159 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
GFRA1P56159 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
GFRA1P56159 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
GFRA1P56159 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC13.25□□□□□ -0.29
GFRA1P56159 AC013355.1-201ENST00000562625 723 ntBASIC13.25□□□□□ -0.29
GFRA1P56159 AC138649.2-201ENST00000615886 705 ntBASIC13.25□□□□□ -0.29
GFRA1P56159 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
GFRA1P56159 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
GFRA1P56159 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
GFRA1P56159 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
GFRA1P56159 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
GFRA1P56159 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
GFRA1P56159 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC13.25□□□□□ -0.29
GFRA1P56159 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
GFRA1P56159 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
GFRA1P56159 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
GFRA1P56159 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
GFRA1P56159 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC13.25□□□□□ -0.29
GFRA1P56159 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
GFRA1P56159 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC13.25□□□□□ -0.29
GFRA1P56159 KHSRPP1-201ENST00000427983 1768 ntBASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms