Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC14.4□□□□□ -0.1
FOXA1P55317 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.4□□□□□ -0.1
FOXA1P55317 CTBP2P3-201ENST00000585629 1255 ntBASIC14.4□□□□□ -0.1
FOXA1P55317 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC14.4□□□□□ -0.1
FOXA1P55317 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC14.4□□□□□ -0.1
FOXA1P55317 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA1P55317 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA1P55317 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC14.4□□□□□ -0.1
FOXA1P55317 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA1P55317 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC14.4□□□□□ -0.1
FOXA1P55317 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA1P55317 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA1P55317 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC14.4□□□□□ -0.1
FOXA1P55317 MRPL37P1-201ENST00000592451 1337 ntBASIC14.4□□□□□ -0.1
FOXA1P55317 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC14.39□□□□□ -0.11
FOXA1P55317 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC14.39□□□□□ -0.11
FOXA1P55317 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
FOXA1P55317 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
FOXA1P55317 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC14.39□□□□□ -0.11
FOXA1P55317 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
FOXA1P55317 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
FOXA1P55317 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
FOXA1P55317 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC14.39□□□□□ -0.11
FOXA1P55317 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC14.39□□□□□ -0.11
FOXA1P55317 MSTO2P-201ENST00000314835 1709 ntBASIC14.39□□□□□ -0.11
FOXA1P55317 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 MIR661-201ENST00000384842 89 ntBASIC14.39□□□□□ -0.11
FOXA1P55317 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 PMS2P2-201ENST00000425039 1128 ntBASIC14.39□□□□□ -0.11
FOXA1P55317 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC14.39□□□□□ -0.11
FOXA1P55317 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.39□□□□□ -0.11
FOXA1P55317 AC092183.1-201ENST00000469884 875 ntBASIC14.39□□□□□ -0.11
FOXA1P55317 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC14.39□□□□□ -0.11
FOXA1P55317 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.39□□□□□ -0.11
FOXA1P55317 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.39□□□□□ -0.11
FOXA1P55317 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 METTL26-214ENST00000614890 801 ntTSL 3 BASIC14.39□□□□□ -0.11
FOXA1P55317 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC14.39□□□□□ -0.11
FOXA1P55317 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC14.39□□□□□ -0.11
FOXA1P55317 AC020910.5-201ENST00000623668 1865 ntBASIC14.39□□□□□ -0.11
FOXA1P55317 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC14.39□□□□□ -0.11
FOXA1P55317 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC14.39□□□□□ -0.11
FOXA1P55317 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC14.39□□□□□ -0.11
FOXA1P55317 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
FOXA1P55317 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 KRT8P35-201ENST00000483942 1338 ntBASIC14.39□□□□□ -0.11
FOXA1P55317 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA1P55317 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC14.39□□□□□ -0.11
FOXA1P55317 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
FOXA1P55317 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA1P55317 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA1P55317 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA1P55317 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
FOXA1P55317 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA1P55317 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA1P55317 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA1P55317 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA1P55317 ST20-AS1-201ENST00000560255 4223 ntBASIC14.38□□□□□ -0.11
FOXA1P55317 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA1P55317 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC14.38□□□□□ -0.11
FOXA1P55317 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC14.38□□□□□ -0.11
FOXA1P55317 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.38□□□□□ -0.11
FOXA1P55317 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA1P55317 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC14.38□□□□□ -0.11
FOXA1P55317 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA1P55317 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA1P55317 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA1P55317 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
FOXA1P55317 AC011840.2-201ENST00000563063 1520 ntBASIC14.38□□□□□ -0.11
FOXA1P55317 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA1P55317 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
FOXA1P55317 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA1P55317 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA1P55317 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA1P55317 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA1P55317 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.38□□□□□ -0.11
FOXA1P55317 SERF2-209ENST00000409646 559 ntTSL 4 BASIC14.38□□□□□ -0.11
FOXA1P55317 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms