Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
MSH6P52701 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
MSH6P52701 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
MSH6P52701 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
MSH6P52701 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
MSH6P52701 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC20.13■□□□□ 0.81
MSH6P52701 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH6P52701 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH6P52701 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH6P52701 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH6P52701 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH6P52701 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC20.13■□□□□ 0.81
MSH6P52701 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH6P52701 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
MSH6P52701 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC20.13■□□□□ 0.81
MSH6P52701 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
MSH6P52701 RNLS-203ENST00000437752 525 ntTSL 2 BASIC20.13■□□□□ 0.81
MSH6P52701 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC20.13■□□□□ 0.81
MSH6P52701 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
MSH6P52701 IGHV1-12-201ENST00000518307 205 ntBASIC20.13■□□□□ 0.81
MSH6P52701 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
MSH6P52701 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC20.13■□□□□ 0.81
MSH6P52701 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH6P52701 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC20.13■□□□□ 0.81
MSH6P52701 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC20.13■□□□□ 0.81
MSH6P52701 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH6P52701 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC20.13■□□□□ 0.81
MSH6P52701 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
MSH6P52701 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
MSH6P52701 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC20.13■□□□□ 0.81
MSH6P52701 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC20.13■□□□□ 0.81
MSH6P52701 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH6P52701 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH6P52701 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
MSH6P52701 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH6P52701 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
MSH6P52701 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
MSH6P52701 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC20.13■□□□□ 0.81
MSH6P52701 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH6P52701 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
MSH6P52701 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH6P52701 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
MSH6P52701 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH6P52701 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH6P52701 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH6P52701 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC20.12■□□□□ 0.81
MSH6P52701 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSH6P52701 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
MSH6P52701 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSH6P52701 AL139384.1-201ENST00000612143 3047 ntBASIC20.12■□□□□ 0.81
MSH6P52701 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC20.12■□□□□ 0.81
MSH6P52701 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC20.12■□□□□ 0.81
MSH6P52701 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
MSH6P52701 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC20.12■□□□□ 0.81
MSH6P52701 AGK-211ENST00000629555 2765 ntTSL 5 BASIC20.12■□□□□ 0.81
MSH6P52701 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
MSH6P52701 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
MSH6P52701 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSH6P52701 HNRNPA1P42-201ENST00000458678 957 ntBASIC20.12■□□□□ 0.81
MSH6P52701 RN7SL767P-201ENST00000493013 295 ntBASIC20.12■□□□□ 0.81
MSH6P52701 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC20.12■□□□□ 0.81
MSH6P52701 AC092862.1-201ENST00000541534 533 ntBASIC20.12■□□□□ 0.81
MSH6P52701 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC20.12■□□□□ 0.81
MSH6P52701 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC20.12■□□□□ 0.81
MSH6P52701 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC20.12■□□□□ 0.81
MSH6P52701 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC20.12■□□□□ 0.81
MSH6P52701 AL160191.2-201ENST00000603975 601 ntBASIC20.12■□□□□ 0.81
MSH6P52701 AC011462.4-201ENST00000616866 449 ntBASIC20.12■□□□□ 0.81
MSH6P52701 AP000769.1-203ENST00000637245 208 ntBASIC20.12■□□□□ 0.81
MSH6P52701 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSH6P52701 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
MSH6P52701 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSH6P52701 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC20.12■□□□□ 0.81
MSH6P52701 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
MSH6P52701 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSH6P52701 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSH6P52701 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
MSH6P52701 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSH6P52701 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSH6P52701 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSH6P52701 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
MSH6P52701 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSH6P52701 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC20.11■□□□□ 0.81
MSH6P52701 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
MSH6P52701 AP005117.1-202ENST00000581724 1908 ntBASIC20.11■□□□□ 0.81
MSH6P52701 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC20.11■□□□□ 0.81
MSH6P52701 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
MSH6P52701 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSH6P52701 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSH6P52701 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC20.11■□□□□ 0.81
MSH6P52701 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSH6P52701 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC20.11■□□□□ 0.81
MSH6P52701 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
MSH6P52701 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC20.11■□□□□ 0.81
MSH6P52701 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
MSH6P52701 FOXN3-AS2-201ENST00000554071 1262 ntBASIC20.11■□□□□ 0.81
MSH6P52701 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC20.11■□□□□ 0.81
MSH6P52701 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC20.11■□□□□ 0.81
MSH6P52701 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSH6P52701 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms