Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL18A1P39060 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC18.91■□□□□ 0.62
COL18A1P39060 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL18A1P39060 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL18A1P39060 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL18A1P39060 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL18A1P39060 AC022080.1-201ENST00000366255 781 ntBASIC18.91■□□□□ 0.62
COL18A1P39060 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL18A1P39060 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC18.91■□□□□ 0.62
COL18A1P39060 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC18.91■□□□□ 0.62
COL18A1P39060 APOC1-209ENST00000592885 562 ntTSL 3 BASIC18.91■□□□□ 0.62
COL18A1P39060 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL18A1P39060 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.91■□□□□ 0.62
COL18A1P39060 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC18.9■□□□□ 0.62
COL18A1P39060 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
COL18A1P39060 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL18A1P39060 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
COL18A1P39060 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC18.9■□□□□ 0.62
COL18A1P39060 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
COL18A1P39060 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC18.9■□□□□ 0.62
COL18A1P39060 AC013268.4-201ENST00000637413 2228 ntBASIC18.9■□□□□ 0.62
COL18A1P39060 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC18.9■□□□□ 0.62
COL18A1P39060 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC18.9■□□□□ 0.62
COL18A1P39060 AC020763.4-201ENST00000623414 4170 ntBASIC18.9■□□□□ 0.62
COL18A1P39060 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL18A1P39060 GOLGA8UP-201ENST00000527159 1755 ntBASIC18.9■□□□□ 0.62
COL18A1P39060 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL18A1P39060 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC18.9■□□□□ 0.62
COL18A1P39060 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC18.9■□□□□ 0.62
COL18A1P39060 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL18A1P39060 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
COL18A1P39060 HNRNPA1P2-207ENST00000432375 960 ntBASIC18.9■□□□□ 0.62
COL18A1P39060 NME6-208ENST00000435684 599 ntTSL 2 BASIC18.9■□□□□ 0.62
COL18A1P39060 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC18.9■□□□□ 0.62
COL18A1P39060 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL18A1P39060 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC18.9■□□□□ 0.62
COL18A1P39060 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL18A1P39060 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC18.9■□□□□ 0.62
COL18A1P39060 AL009176.1-201ENST00000607876 650 ntBASIC18.9■□□□□ 0.62
COL18A1P39060 AC018695.6-201ENST00000614011 534 ntBASIC18.9■□□□□ 0.62
COL18A1P39060 AP000769.1-203ENST00000637245 208 ntBASIC18.9■□□□□ 0.62
COL18A1P39060 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC18.9■□□□□ 0.62
COL18A1P39060 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL18A1P39060 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC18.9■□□□□ 0.62
COL18A1P39060 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC18.9■□□□□ 0.62
COL18A1P39060 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC18.9■□□□□ 0.62
COL18A1P39060 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
COL18A1P39060 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL18A1P39060 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
COL18A1P39060 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC18.89■□□□□ 0.62
COL18A1P39060 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.62
COL18A1P39060 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL18A1P39060 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL18A1P39060 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
COL18A1P39060 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL18A1P39060 OR10N1P-201ENST00000392758 869 ntBASIC18.89■□□□□ 0.61
COL18A1P39060 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC18.89■□□□□ 0.61
COL18A1P39060 AL451000.1-201ENST00000451300 1186 ntBASIC18.89■□□□□ 0.61
COL18A1P39060 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL18A1P39060 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC18.89■□□□□ 0.61
COL18A1P39060 AC087203.1-201ENST00000532111 1181 ntBASIC18.89■□□□□ 0.61
COL18A1P39060 AP005212.2-201ENST00000584979 510 ntBASIC18.89■□□□□ 0.61
COL18A1P39060 DGAT2L7P-201ENST00000602462 744 ntBASIC18.89■□□□□ 0.61
COL18A1P39060 AL627230.2-201ENST00000613254 655 ntBASIC18.89■□□□□ 0.61
COL18A1P39060 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC18.89■□□□□ 0.61
COL18A1P39060 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC18.89■□□□□ 0.61
COL18A1P39060 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
COL18A1P39060 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL18A1P39060 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
COL18A1P39060 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL18A1P39060 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL18A1P39060 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL18A1P39060 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL18A1P39060 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL18A1P39060 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.89■□□□□ 0.61
COL18A1P39060 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
COL18A1P39060 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.89■□□□□ 0.61
COL18A1P39060 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC18.89■□□□□ 0.61
COL18A1P39060 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
COL18A1P39060 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC18.89■□□□□ 0.61
COL18A1P39060 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC18.89■□□□□ 0.61
COL18A1P39060 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL18A1P39060 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL18A1P39060 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL18A1P39060 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
COL18A1P39060 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC18.88■□□□□ 0.61
COL18A1P39060 AL512599.1-201ENST00000430724 685 ntBASIC18.88■□□□□ 0.61
COL18A1P39060 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC18.88■□□□□ 0.61
COL18A1P39060 RPL3P5-201ENST00000441645 1232 ntBASIC18.88■□□□□ 0.61
COL18A1P39060 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC18.88■□□□□ 0.61
COL18A1P39060 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
COL18A1P39060 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL18A1P39060 MIR6074-201ENST00000612054 107 ntBASIC18.88■□□□□ 0.61
COL18A1P39060 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL18A1P39060 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC18.88■□□□□ 0.61
COL18A1P39060 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL18A1P39060 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL18A1P39060 AC138761.6-201ENST00000583997 1423 ntBASIC18.88■□□□□ 0.61
COL18A1P39060 AC006486.2-201ENST00000624246 2199 ntBASIC18.88■□□□□ 0.61
COL18A1P39060 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms