Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC007193.3-201ENST00000598616 188 ntTSL 3 BASIC16.97■□□□□ 0.31
SCN4AP35499 CSTP2-201ENST00000610599 398 ntBASIC16.97■□□□□ 0.31
SCN4AP35499 AC139713.2-207ENST00000641556 1292 ntBASIC16.97■□□□□ 0.31
SCN4AP35499 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SCN4AP35499 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SCN4AP35499 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SCN4AP35499 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SCN4AP35499 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.97■□□□□ 0.31
SCN4AP35499 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SCN4AP35499 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SCN4AP35499 AC112693.3-201ENST00000624819 1983 ntBASIC16.97■□□□□ 0.31
SCN4AP35499 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SCN4AP35499 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
SCN4AP35499 LINC00205-201ENST00000433465 1391 ntTSL 3 BASIC16.97■□□□□ 0.31
SCN4AP35499 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
SCN4AP35499 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
SCN4AP35499 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.97■□□□□ 0.31
SCN4AP35499 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SCN4AP35499 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
SCN4AP35499 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC16.97■□□□□ 0.31
SCN4AP35499 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SCN4AP35499 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SCN4AP35499 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.96■□□□□ 0.31
SCN4AP35499 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SCN4AP35499 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SCN4AP35499 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
SCN4AP35499 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SCN4AP35499 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SCN4AP35499 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
SCN4AP35499 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SCN4AP35499 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
SCN4AP35499 IL37-204ENST00000352179 709 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SCN4AP35499 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SCN4AP35499 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
SCN4AP35499 FAM197Y6-201ENST00000420524 766 ntBASIC16.96■□□□□ 0.31
SCN4AP35499 AC092573.1-201ENST00000433054 884 ntBASIC16.96■□□□□ 0.31
SCN4AP35499 NALT1-202ENST00000450304 437 ntTSL 3 BASIC16.96■□□□□ 0.31
SCN4AP35499 RN7SL578P-201ENST00000477781 283 ntBASIC16.96■□□□□ 0.31
SCN4AP35499 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SCN4AP35499 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC16.96■□□□□ 0.31
SCN4AP35499 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC16.96■□□□□ 0.31
SCN4AP35499 AL807740.1-201ENST00000636971 567 ntTSL 4 BASIC16.96■□□□□ 0.31
SCN4AP35499 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.96■□□□□ 0.31
SCN4AP35499 AC126365.1-201ENST00000578585 1514 ntBASIC16.96■□□□□ 0.31
SCN4AP35499 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SCN4AP35499 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SCN4AP35499 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC16.96■□□□□ 0.31
SCN4AP35499 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SCN4AP35499 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
SCN4AP35499 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
SCN4AP35499 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SCN4AP35499 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SCN4AP35499 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.96■□□□□ 0.31
SCN4AP35499 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SCN4AP35499 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
SCN4AP35499 KRT8P43-201ENST00000406052 1458 ntBASIC16.96■□□□□ 0.31
SCN4AP35499 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
SCN4AP35499 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC16.96■□□□□ 0.3
SCN4AP35499 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC16.96■□□□□ 0.3
SCN4AP35499 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC16.96■□□□□ 0.3
SCN4AP35499 AC093300.1-201ENST00000510368 1201 ntBASIC16.96■□□□□ 0.3
SCN4AP35499 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC16.96■□□□□ 0.3
SCN4AP35499 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC16.96■□□□□ 0.3
SCN4AP35499 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC16.96■□□□□ 0.3
SCN4AP35499 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
SCN4AP35499 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
SCN4AP35499 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SCN4AP35499 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SCN4AP35499 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
SCN4AP35499 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SCN4AP35499 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SCN4AP35499 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
SCN4AP35499 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SCN4AP35499 AP003680.1-201ENST00000598970 3660 ntBASIC16.95■□□□□ 0.3
SCN4AP35499 SSR4-202ENST00000370085 526 ntTSL 2 BASIC16.95■□□□□ 0.3
SCN4AP35499 MED15P3-201ENST00000413613 326 ntBASIC16.95■□□□□ 0.3
SCN4AP35499 EEF1DP2-201ENST00000433698 843 ntBASIC16.95■□□□□ 0.3
SCN4AP35499 ZNF877P-201ENST00000437614 612 ntBASIC16.95■□□□□ 0.3
SCN4AP35499 TREX1-203ENST00000456089 629 ntTSL 3 BASIC16.95■□□□□ 0.3
SCN4AP35499 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SCN4AP35499 BATF-202ENST00000555504 361 ntTSL 2 BASIC16.95■□□□□ 0.3
SCN4AP35499 CDIPT-AS1-202ENST00000565014 729 ntTSL 2 BASIC16.95■□□□□ 0.3
SCN4AP35499 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SCN4AP35499 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
SCN4AP35499 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
SCN4AP35499 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SCN4AP35499 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
SCN4AP35499 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.95■□□□□ 0.3
SCN4AP35499 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC16.95■□□□□ 0.3
SCN4AP35499 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.94■□□□□ 0.3
SCN4AP35499 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SCN4AP35499 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SCN4AP35499 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.94■□□□□ 0.3
SCN4AP35499 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.94■□□□□ 0.3
SCN4AP35499 TOMM5-203ENST00000401811 789 ntTSL 2 BASIC16.94■□□□□ 0.3
SCN4AP35499 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SCN4AP35499 MAGEA7P-201ENST00000436482 942 ntBASIC16.94■□□□□ 0.3
SCN4AP35499 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC16.94■□□□□ 0.3
SCN4AP35499 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC16.94■□□□□ 0.3
SCN4AP35499 HNRNPA3P6-201ENST00000472163 1006 ntBASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms