Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC16.59■□□□□ 0.25
MSH4O15457 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC16.59■□□□□ 0.25
MSH4O15457 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH4O15457 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH4O15457 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
MSH4O15457 DPM3-202ENST00000368399 517 ntBASIC16.59■□□□□ 0.25
MSH4O15457 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
MSH4O15457 HNRNPA1P32-201ENST00000396326 963 ntBASIC16.59■□□□□ 0.25
MSH4O15457 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC16.59■□□□□ 0.25
MSH4O15457 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MSH4O15457 NKAIN1P1-201ENST00000435754 582 ntBASIC16.59■□□□□ 0.25
MSH4O15457 AC012441.2-201ENST00000444843 739 ntBASIC16.59■□□□□ 0.25
MSH4O15457 RPL18P13-201ENST00000478088 569 ntBASIC16.59■□□□□ 0.25
MSH4O15457 AC099548.2-209ENST00000480264 625 ntBASIC16.59■□□□□ 0.25
MSH4O15457 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH4O15457 AP001258.2-201ENST00000529891 490 ntBASIC16.59■□□□□ 0.25
MSH4O15457 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC16.59■□□□□ 0.25
MSH4O15457 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC16.59■□□□□ 0.25
MSH4O15457 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC16.59■□□□□ 0.25
MSH4O15457 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
MSH4O15457 AC005962.1-201ENST00000584100 773 ntBASIC16.59■□□□□ 0.25
MSH4O15457 AL451050.2-201ENST00000606967 682 ntBASIC16.59■□□□□ 0.25
MSH4O15457 DIO1-215ENST00000610607 796 ntTSL 5 BASIC16.59■□□□□ 0.25
MSH4O15457 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH4O15457 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH4O15457 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
MSH4O15457 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MSH4O15457 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MSH4O15457 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH4O15457 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.59■□□□□ 0.25
MSH4O15457 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
MSH4O15457 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH4O15457 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC16.59■□□□□ 0.25
MSH4O15457 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
MSH4O15457 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
MSH4O15457 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MSH4O15457 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
MSH4O15457 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
MSH4O15457 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH4O15457 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH4O15457 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC16.59■□□□□ 0.25
MSH4O15457 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH4O15457 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
MSH4O15457 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC16.58■□□□□ 0.25
MSH4O15457 MBLAC2-202ENST00000514906 1936 ntBASIC16.58■□□□□ 0.25
MSH4O15457 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
MSH4O15457 AP001267.2-201ENST00000532619 2086 ntBASIC16.58■□□□□ 0.25
MSH4O15457 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
MSH4O15457 LINC00552-201ENST00000625151 2579 ntBASIC16.58■□□□□ 0.25
MSH4O15457 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.25
MSH4O15457 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSH4O15457 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSH4O15457 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC16.58■□□□□ 0.24
MSH4O15457 GPAA1P2-201ENST00000417923 928 ntBASIC16.58■□□□□ 0.24
MSH4O15457 VDAC1P1-201ENST00000439229 848 ntBASIC16.58■□□□□ 0.24
MSH4O15457 AC104073.2-201ENST00000453737 312 ntBASIC16.58■□□□□ 0.24
MSH4O15457 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSH4O15457 KC6-205ENST00000599934 556 ntTSL 4 BASIC16.58■□□□□ 0.24
MSH4O15457 RPL35-206ENST00000629845 340 ntTSL 5 BASIC16.58■□□□□ 0.24
MSH4O15457 AC004923.1-202ENST00000642106 209 ntBASIC16.58■□□□□ 0.24
MSH4O15457 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
MSH4O15457 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSH4O15457 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC16.58■□□□□ 0.24
MSH4O15457 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
MSH4O15457 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSH4O15457 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSH4O15457 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC16.58■□□□□ 0.24
MSH4O15457 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC16.58■□□□□ 0.24
MSH4O15457 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
MSH4O15457 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC16.58■□□□□ 0.24
MSH4O15457 MYADML-201ENST00000474610 2147 ntBASIC16.58■□□□□ 0.24
MSH4O15457 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSH4O15457 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSH4O15457 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC16.58■□□□□ 0.24
MSH4O15457 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
MSH4O15457 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSH4O15457 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSH4O15457 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSH4O15457 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSH4O15457 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSH4O15457 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSH4O15457 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSH4O15457 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC16.57■□□□□ 0.24
MSH4O15457 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSH4O15457 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSH4O15457 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
MSH4O15457 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSH4O15457 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MSH4O15457 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC16.57■□□□□ 0.24
MSH4O15457 AC009093.10-201ENST00000641956 1442 ntBASIC16.57■□□□□ 0.24
MSH4O15457 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MSH4O15457 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSH4O15457 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
MSH4O15457 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC16.57■□□□□ 0.24
MSH4O15457 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MSH4O15457 AC022447.6-201ENST00000515522 438 ntBASIC16.57■□□□□ 0.24
MSH4O15457 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC16.57■□□□□ 0.24
MSH4O15457 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MSH4O15457 AL160314.3-201ENST00000556041 767 ntBASIC16.57■□□□□ 0.24
MSH4O15457 MIR3615-201ENST00000581999 87 ntBASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms