Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 AC005252.3-201ENST00000623855 2258 ntBASIC12.73□□□□□ -0.37
SDCBPO00560 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
SDCBPO00560 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
SDCBPO00560 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 AL354702.1-201ENST00000442006 1960 ntBASIC12.73□□□□□ -0.37
SDCBPO00560 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC12.73□□□□□ -0.37
SDCBPO00560 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC12.73□□□□□ -0.37
SDCBPO00560 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC12.73□□□□□ -0.37
SDCBPO00560 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC12.73□□□□□ -0.37
SDCBPO00560 BASP1P1-201ENST00000430708 665 ntBASIC12.73□□□□□ -0.37
SDCBPO00560 AC093214.1-201ENST00000511688 1107 ntBASIC12.73□□□□□ -0.37
SDCBPO00560 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC12.73□□□□□ -0.37
SDCBPO00560 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC12.73□□□□□ -0.37
SDCBPO00560 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC12.73□□□□□ -0.37
SDCBPO00560 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC12.73□□□□□ -0.37
SDCBPO00560 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC12.73□□□□□ -0.37
SDCBPO00560 SAMD11P1-201ENST00000571429 661 ntBASIC12.73□□□□□ -0.37
SDCBPO00560 GPR39-203ENST00000622084 900 ntTSL 5 BASIC12.73□□□□□ -0.37
SDCBPO00560 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC12.73□□□□□ -0.37
SDCBPO00560 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC12.73□□□□□ -0.37
SDCBPO00560 PEG13-201ENST00000631594 5667 ntBASIC12.73□□□□□ -0.37
SDCBPO00560 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
SDCBPO00560 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC12.73□□□□□ -0.37
SDCBPO00560 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC12.73□□□□□ -0.37
SDCBPO00560 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
SDCBPO00560 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC12.73□□□□□ -0.37
SDCBPO00560 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC12.73□□□□□ -0.37
SDCBPO00560 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC12.73□□□□□ -0.37
SDCBPO00560 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SDCBPO00560 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
SDCBPO00560 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
SDCBPO00560 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
SDCBPO00560 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
SDCBPO00560 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SDCBPO00560 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
SDCBPO00560 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SDCBPO00560 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SDCBPO00560 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
SDCBPO00560 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC12.72□□□□□ -0.37
SDCBPO00560 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC12.72□□□□□ -0.37
SDCBPO00560 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC12.72□□□□□ -0.37
SDCBPO00560 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SDCBPO00560 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
SDCBPO00560 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SDCBPO00560 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
SDCBPO00560 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
SDCBPO00560 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC12.72□□□□□ -0.37
SDCBPO00560 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC12.72□□□□□ -0.37
SDCBPO00560 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
SDCBPO00560 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC12.72□□□□□ -0.37
SDCBPO00560 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SDCBPO00560 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SDCBPO00560 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC12.72□□□□□ -0.37
SDCBPO00560 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC12.72□□□□□ -0.37
SDCBPO00560 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC12.72□□□□□ -0.37
SDCBPO00560 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC12.72□□□□□ -0.37
SDCBPO00560 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC12.72□□□□□ -0.37
SDCBPO00560 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC12.72□□□□□ -0.37
SDCBPO00560 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC12.72□□□□□ -0.37
SDCBPO00560 AC009407.1-201ENST00000568958 598 ntBASIC12.72□□□□□ -0.37
SDCBPO00560 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC12.72□□□□□ -0.37
SDCBPO00560 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC12.72□□□□□ -0.37
SDCBPO00560 AC000095.1-201ENST00000603208 874 ntBASIC12.72□□□□□ -0.37
SDCBPO00560 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC12.72□□□□□ -0.37
SDCBPO00560 AL158212.4-201ENST00000624062 1286 ntBASIC12.72□□□□□ -0.37
SDCBPO00560 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC12.72□□□□□ -0.37
SDCBPO00560 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC12.72□□□□□ -0.37
SDCBPO00560 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC12.72□□□□□ -0.37
SDCBPO00560 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC12.72□□□□□ -0.37
SDCBPO00560 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SDCBPO00560 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SDCBPO00560 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms