Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
FOXN3O00409 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXN3O00409 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXN3O00409 ZBTB12BP-201ENST00000314232 1122 ntBASIC15.9■□□□□ 0.14
FOXN3O00409 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXN3O00409 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
FOXN3O00409 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
FOXN3O00409 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXN3O00409 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC15.9■□□□□ 0.14
FOXN3O00409 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC15.9■□□□□ 0.14
FOXN3O00409 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC15.9■□□□□ 0.14
FOXN3O00409 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
FOXN3O00409 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC15.9■□□□□ 0.14
FOXN3O00409 AC106820.3-201ENST00000561653 397 ntBASIC15.9■□□□□ 0.14
FOXN3O00409 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC15.9■□□□□ 0.14
FOXN3O00409 BTNL10-201ENST00000595971 695 ntBASIC15.9■□□□□ 0.14
FOXN3O00409 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXN3O00409 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
FOXN3O00409 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.9■□□□□ 0.14
FOXN3O00409 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
FOXN3O00409 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXN3O00409 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXN3O00409 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXN3O00409 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
FOXN3O00409 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
FOXN3O00409 USP4-203ENST00000415188 1454 ntTSL 3 BASIC15.9■□□□□ 0.14
FOXN3O00409 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
FOXN3O00409 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXN3O00409 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
FOXN3O00409 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
FOXN3O00409 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXN3O00409 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.14
FOXN3O00409 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXN3O00409 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC15.89■□□□□ 0.13
FOXN3O00409 AC090505.1-201ENST00000430515 1834 ntBASIC15.89■□□□□ 0.13
FOXN3O00409 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC15.89■□□□□ 0.13
FOXN3O00409 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXN3O00409 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
FOXN3O00409 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXN3O00409 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXN3O00409 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC15.89■□□□□ 0.13
FOXN3O00409 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
FOXN3O00409 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXN3O00409 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
FOXN3O00409 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
FOXN3O00409 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC15.89■□□□□ 0.13
FOXN3O00409 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXN3O00409 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
FOXN3O00409 GUK1-206ENST00000366723 845 ntTSL 5 BASIC15.89■□□□□ 0.13
FOXN3O00409 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXN3O00409 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC15.89■□□□□ 0.13
FOXN3O00409 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXN3O00409 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
FOXN3O00409 RN7SKP175-201ENST00000408472 289 ntBASIC15.89■□□□□ 0.13
FOXN3O00409 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
FOXN3O00409 TTTY23B-201ENST00000442790 549 ntBASIC15.89■□□□□ 0.13
FOXN3O00409 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC15.89■□□□□ 0.13
FOXN3O00409 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC15.89■□□□□ 0.13
FOXN3O00409 AL590640.2-201ENST00000457038 527 ntBASIC15.89■□□□□ 0.13
FOXN3O00409 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
FOXN3O00409 FTH1P14-201ENST00000482930 551 ntBASIC15.89■□□□□ 0.13
FOXN3O00409 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC15.89■□□□□ 0.13
FOXN3O00409 RNA5SP486-201ENST00000515961 83 ntBASIC15.89■□□□□ 0.13
FOXN3O00409 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC15.89■□□□□ 0.13
FOXN3O00409 AP003171.2-201ENST00000528208 925 ntBASIC15.89■□□□□ 0.13
FOXN3O00409 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC15.89■□□□□ 0.13
FOXN3O00409 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC15.89■□□□□ 0.13
FOXN3O00409 AC233724.13-201ENST00000598383 410 ntBASIC15.89■□□□□ 0.13
FOXN3O00409 AC244669.2-201ENST00000612320 853 ntBASIC15.89■□□□□ 0.13
FOXN3O00409 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.89■□□□□ 0.13
FOXN3O00409 RN7SL832P-201ENST00000607781 1756 ntBASIC15.89■□□□□ 0.13
FOXN3O00409 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXN3O00409 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXN3O00409 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC15.89■□□□□ 0.13
FOXN3O00409 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.89■□□□□ 0.13
FOXN3O00409 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXN3O00409 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXN3O00409 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC15.89■□□□□ 0.13
FOXN3O00409 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXN3O00409 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXN3O00409 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
FOXN3O00409 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXN3O00409 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
FOXN3O00409 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC15.88■□□□□ 0.13
FOXN3O00409 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
FOXN3O00409 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXN3O00409 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
FOXN3O00409 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
FOXN3O00409 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
FOXN3O00409 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC15.88■□□□□ 0.13
FOXN3O00409 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC15.88■□□□□ 0.13
FOXN3O00409 CU639417.3-201ENST00000624240 1404 ntBASIC15.88■□□□□ 0.13
FOXN3O00409 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC15.88■□□□□ 0.13
FOXN3O00409 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXN3O00409 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
FOXN3O00409 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC15.88■□□□□ 0.13
FOXN3O00409 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
FOXN3O00409 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC15.88■□□□□ 0.13
FOXN3O00409 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC15.88■□□□□ 0.13
FOXN3O00409 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms