Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 KRT8P35-201ENST00000483942 1338 ntBASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 AC022137.2-201ENST00000503482 481 ntBASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 AC027796.2-201ENST00000575326 344 ntBASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 ATF5-205ENST00000600336 682 ntTSL 2 BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 PTENP1-202ENST00000532280 3996 ntBASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 AC136759.1-202ENST00000530858 2194 ntBASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIF3AQ9Y2N7 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 USE1-206ENST00000595101 1776 ntTSL 2 BASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 MIR661-201ENST00000384842 89 ntBASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 CDK4-206ENST00000549606 558 ntTSL 2 BASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 CTBP2P3-201ENST00000585629 1255 ntBASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 LINC02560-201ENST00000596379 459 ntBASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 CU634019.7-201ENST00000624153 1185 ntBASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 FP236241.2-201ENST00000624906 1185 ntBASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
HIF3AQ9Y2N7 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms