Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 AL035633.1-201ENST00000406139 838 ntBASIC12.08□□□□□ -0.48
FOXA2Q9Y261 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 RN7SL752P-201ENST00000463779 287 ntBASIC12.08□□□□□ -0.48
FOXA2Q9Y261 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 HNRNPA1P13-201ENST00000510646 963 ntBASIC12.08□□□□□ -0.48
FOXA2Q9Y261 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 PIGL-212ENST00000581006 554 ntTSL 4 BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 WFDC1-204ENST00000613603 549 ntBASIC12.08□□□□□ -0.48
FOXA2Q9Y261 CU634019.7-201ENST00000624153 1185 ntBASIC12.08□□□□□ -0.48
FOXA2Q9Y261 FP236241.2-201ENST00000624906 1185 ntBASIC12.08□□□□□ -0.48
FOXA2Q9Y261 AL033527.5-201ENST00000641382 801 ntBASIC12.08□□□□□ -0.48
FOXA2Q9Y261 PRSS30P-206ENST00000641773 873 ntBASIC12.08□□□□□ -0.48
FOXA2Q9Y261 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 API5-203ENST00000455725 2257 ntTSL 2 BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 TEX30-203ENST00000376022 828 ntTSL 2 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 COX20P2-201ENST00000452636 358 ntBASIC12.07□□□□□ -0.48
FOXA2Q9Y261 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 BX539320.1-201ENST00000623759 877 ntBASIC12.07□□□□□ -0.48
FOXA2Q9Y261 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms