Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 EID1-202ENST00000560490 584 ntTSL 3 BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 BNIP3P13-201ENST00000599968 566 ntBASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 AL136301.1-201ENST00000615830 422 ntBASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 GGCT-203ENST00000409144 836 ntTSL 2 BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 AC013355.1-201ENST00000562625 723 ntBASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 AL358472.3-201ENST00000608147 415 ntBASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TM9SF3Q9HD45 GSN-215ENST00000545652 2428 ntTSL 2 BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 GPI-205ENST00000586425 1799 ntTSL 5 BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 AC023908.3-201ENST00000564211 3047 ntBASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 RN7SKP175-201ENST00000408472 289 ntBASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC14.88□□□□□ -0.03
TM9SF3Q9HD45 HINT2P1-201ENST00000419438 481 ntBASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms