Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 AC011474.4-201ENST00000623523 2076 ntBASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 AL031595.1-201ENST00000623969 4709 ntBASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 RPS15-201ENST00000233609 534 ntTSL 2 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 LSM5-207ENST00000410044 687 ntTSL 3 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 TLE1P1-201ENST00000422965 589 ntBASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 AC114812.1-204ENST00000449669 728 ntBASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 DOC2GP-202ENST00000514950 1163 ntBASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 AC022616.1-201ENST00000518688 554 ntBASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 DUX4L27-201ENST00000554796 1261 ntBASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 RPS15-205ENST00000586686 562 ntTSL 5 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 RPS15-208ENST00000591804 711 ntTSL 5 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 AL390754.1-201ENST00000619088 582 ntBASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
POLR2J3Q9H1A7 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 DKFZP434A062-201ENST00000573103 5021 ntBASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
POLR2J3Q9H1A7 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms