Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
ERCC4Q92889 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC4Q92889 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC4Q92889 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC4Q92889 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC4Q92889 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC16.95■□□□□ 0.3
ERCC4Q92889 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC4Q92889 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC16.95■□□□□ 0.3
ERCC4Q92889 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC4Q92889 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
ERCC4Q92889 ABR-205ENST00000544583 5595 ntTSL 2 BASIC16.95■□□□□ 0.3
ERCC4Q92889 BTBD7P1-201ENST00000447253 1453 ntBASIC16.95■□□□□ 0.3
ERCC4Q92889 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC4Q92889 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC4Q92889 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC4Q92889 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
ERCC4Q92889 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
ERCC4Q92889 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC16.95■□□□□ 0.3
ERCC4Q92889 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.95■□□□□ 0.3
ERCC4Q92889 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.95■□□□□ 0.3
ERCC4Q92889 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
ERCC4Q92889 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16.95■□□□□ 0.3
ERCC4Q92889 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC16.95■□□□□ 0.3
ERCC4Q92889 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16.95■□□□□ 0.3
ERCC4Q92889 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC16.95■□□□□ 0.3
ERCC4Q92889 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC16.95■□□□□ 0.3
ERCC4Q92889 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC16.95■□□□□ 0.3
ERCC4Q92889 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC16.95■□□□□ 0.3
ERCC4Q92889 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC16.95■□□□□ 0.3
ERCC4Q92889 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC4Q92889 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
ERCC4Q92889 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC4Q92889 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
ERCC4Q92889 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC4Q92889 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC4Q92889 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC4Q92889 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC4Q92889 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC4Q92889 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC16.95■□□□□ 0.3
ERCC4Q92889 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC4Q92889 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC4Q92889 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC4Q92889 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
ERCC4Q92889 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC4Q92889 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC4Q92889 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC4Q92889 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC4Q92889 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC16.94■□□□□ 0.3
ERCC4Q92889 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC4Q92889 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
ERCC4Q92889 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC4Q92889 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC16.94■□□□□ 0.3
ERCC4Q92889 AC107918.4-201ENST00000641966 3141 ntBASIC16.94■□□□□ 0.3
ERCC4Q92889 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC16.94■□□□□ 0.3
ERCC4Q92889 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.94■□□□□ 0.3
ERCC4Q92889 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC4Q92889 RN7SL399P-201ENST00000471648 279 ntBASIC16.94■□□□□ 0.3
ERCC4Q92889 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC4Q92889 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC16.94■□□□□ 0.3
ERCC4Q92889 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC16.94■□□□□ 0.3
ERCC4Q92889 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
ERCC4Q92889 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
ERCC4Q92889 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC16.94■□□□□ 0.3
ERCC4Q92889 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC4Q92889 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC16.94■□□□□ 0.3
ERCC4Q92889 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC4Q92889 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
ERCC4Q92889 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC4Q92889 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC16.94■□□□□ 0.3
ERCC4Q92889 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC16.94■□□□□ 0.3
ERCC4Q92889 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC4Q92889 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC4Q92889 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC4Q92889 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC16.93■□□□□ 0.3
ERCC4Q92889 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC4Q92889 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
ERCC4Q92889 ADK-205ENST00000539909 1866 ntTSL 2 BASIC16.93■□□□□ 0.3
ERCC4Q92889 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC4Q92889 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC4Q92889 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC4Q92889 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC16.93■□□□□ 0.3
ERCC4Q92889 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC4Q92889 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC16.93■□□□□ 0.3
ERCC4Q92889 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC4Q92889 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC4Q92889 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC4Q92889 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC16.93■□□□□ 0.3
ERCC4Q92889 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC16.93■□□□□ 0.3
ERCC4Q92889 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC16.93■□□□□ 0.3
ERCC4Q92889 RARRES2P5-201ENST00000564013 466 ntBASIC16.93■□□□□ 0.3
ERCC4Q92889 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC16.93■□□□□ 0.3
ERCC4Q92889 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.93■□□□□ 0.3
ERCC4Q92889 RNA5-8SN1-201ENST00000610460 153 ntBASIC16.93■□□□□ 0.3
ERCC4Q92889 RNA5-8SN5-202ENST00000612463 153 ntBASIC16.93■□□□□ 0.3
ERCC4Q92889 RNA5-8SN4-201ENST00000613359 153 ntBASIC16.93■□□□□ 0.3
ERCC4Q92889 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC16.93■□□□□ 0.3
ERCC4Q92889 RNA5-8SN5-201ENST00000619471 153 ntBASIC16.93■□□□□ 0.3
ERCC4Q92889 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC16.93■□□□□ 0.3
ERCC4Q92889 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC16.93■□□□□ 0.3
ERCC4Q92889 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms