Protein–RNA interactions for Protein: Q8WWV3

RTN4IP1, Reticulon-4-interacting protein 1, mitochondrial, humanhuman

Predicted RBP Predictions only

Length 396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4IP1Q8WWV3 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 INGX-202ENST00000489074 768 ntBASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 SPDYE18-201ENST00000510091 1050 ntBASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 AC104794.3-201ENST00000566840 1248 ntBASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RTN4IP1Q8WWV3 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 MIR770-201ENST00000390219 98 ntBASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 REEP4-207ENST00000523293 913 ntTSL 3 BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 ARL16-202ENST00000570561 768 ntTSL 2 BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 AC000095.1-201ENST00000603208 874 ntBASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 RNA5-8SN1-201ENST00000610460 153 ntBASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 RNA5-8SN5-202ENST00000612463 153 ntBASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 RNA5-8SN4-201ENST00000613359 153 ntBASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 RNA5-8SN5-201ENST00000619471 153 ntBASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 AL158212.4-201ENST00000624062 1286 ntBASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 AC023090.2-201ENST00000625182 2110 ntBASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
RTN4IP1Q8WWV3 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RTN4IP1Q8WWV3 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
RTN4IP1Q8WWV3 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RTN4IP1Q8WWV3 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
RTN4IP1Q8WWV3 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
RTN4IP1Q8WWV3 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
RTN4IP1Q8WWV3 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
RTN4IP1Q8WWV3 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RTN4IP1Q8WWV3 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms