Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 RNA5SP486-201ENST00000515961 83 ntBASIC4.66□□□□□ -1.66
SYNE1Q8NF91 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 SPCS2P2-201ENST00000603270 608 ntBASIC4.66□□□□□ -1.66
SYNE1Q8NF91 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 DLGAP3-202ENST00000373347 3856 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 GRN-222ENST00000639447 1314 ntTSL 2 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 PTPRN2-202ENST00000389416 4692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 BOLA2P3-201ENST00000404566 256 ntBASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 NUP210P1-202ENST00000504322 710 ntBASIC4.66□□□□□ -1.66
SYNE1Q8NF91 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 SLC25A25-203ENST00000373068 3431 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 MPV17-204ENST00000399052 749 ntTSL 4 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 HINT2P1-201ENST00000419438 481 ntBASIC4.65□□□□□ -1.66
SYNE1Q8NF91 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 CALR4P-201ENST00000431943 946 ntBASIC4.65□□□□□ -1.66
SYNE1Q8NF91 MTX1P1-201ENST00000440904 838 ntBASIC4.65□□□□□ -1.66
SYNE1Q8NF91 AC106760.1-201ENST00000508690 800 ntBASIC4.65□□□□□ -1.66
SYNE1Q8NF91 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 FAM21FP-201ENST00000426241 1131 ntBASIC4.65□□□□□ -1.66
SYNE1Q8NF91 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 GCK-209ENST00000616242 2260 ntTSL 5 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 PCDHGA8-201ENST00000398604 4605 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 FAM219A-207ENST00000379089 3624 ntAPPRIS ALT1 TSL 3 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 STK11IP-204ENST00000456909 3615 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC4.65□□□□□ -1.66
SYNE1Q8NF91 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC4.65□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms