Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SCUBE3Q8IX30 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC15.68■□□□□ 0.1
SCUBE3Q8IX30 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SCUBE3Q8IX30 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SCUBE3Q8IX30 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
SCUBE3Q8IX30 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SCUBE3Q8IX30 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SCUBE3Q8IX30 AC068418.2-201ENST00000577309 3703 ntBASIC15.68■□□□□ 0.1
SCUBE3Q8IX30 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SCUBE3Q8IX30 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SCUBE3Q8IX30 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC15.68■□□□□ 0.1
SCUBE3Q8IX30 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.68■□□□□ 0.1
SCUBE3Q8IX30 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
SCUBE3Q8IX30 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 C2orf69P2-201ENST00000562032 1123 ntBASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 HNRNPA1P48-202ENST00000565308 961 ntBASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 AC232323.1-201ENST00000540724 2099 ntBASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SCUBE3Q8IX30 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 TPO-206ENST00000382269 1155 ntTSL 5 BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 RGS5-214ENST00000429865 754 ntTSL 3 BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 AP000240.1-201ENST00000609910 452 ntBASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 AC097359.2-201ENST00000604992 2389 ntBASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SCUBE3Q8IX30 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms