Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC12.28□□□□□ -0.44
CDX1P47902 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC12.28□□□□□ -0.44
CDX1P47902 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC12.28□□□□□ -0.44
CDX1P47902 CECR7-204ENST00000609932 568 ntTSL 2 BASIC12.28□□□□□ -0.44
CDX1P47902 AC012645.4-201ENST00000610691 1061 ntBASIC12.28□□□□□ -0.44
CDX1P47902 AC116165.1-201ENST00000611806 668 ntBASIC12.28□□□□□ -0.44
CDX1P47902 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC12.28□□□□□ -0.44
CDX1P47902 HADH-212ENST00000638621 741 ntTSL 5 BASIC12.28□□□□□ -0.44
CDX1P47902 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
CDX1P47902 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC12.28□□□□□ -0.44
CDX1P47902 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CDX1P47902 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC12.28□□□□□ -0.44
CDX1P47902 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CDX1P47902 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
CDX1P47902 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
CDX1P47902 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CDX1P47902 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CDX1P47902 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
CDX1P47902 TTK-201ENST00000230510 3477 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
CDX1P47902 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CDX1P47902 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC12.28□□□□□ -0.44
CDX1P47902 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CDX1P47902 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC12.27□□□□□ -0.44
CDX1P47902 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
CDX1P47902 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
CDX1P47902 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC12.27□□□□□ -0.44
CDX1P47902 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.44
CDX1P47902 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
CDX1P47902 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
CDX1P47902 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
CDX1P47902 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
CDX1P47902 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
CDX1P47902 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.44
CDX1P47902 MDM1-203ENST00000393543 2718 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
CDX1P47902 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC12.27□□□□□ -0.44
CDX1P47902 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC12.27□□□□□ -0.44
CDX1P47902 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
CDX1P47902 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
CDX1P47902 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC12.27□□□□□ -0.45
CDX1P47902 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CDX1P47902 COX6B2-210ENST00000593184 2083 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
CDX1P47902 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
CDX1P47902 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
CDX1P47902 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
CDX1P47902 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CDX1P47902 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC12.27□□□□□ -0.45
CDX1P47902 GRAP-202ENST00000395635 834 ntTSL 2 BASIC12.27□□□□□ -0.45
CDX1P47902 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC12.27□□□□□ -0.45
CDX1P47902 RPL13P2-201ENST00000440687 659 ntBASIC12.27□□□□□ -0.45
CDX1P47902 USP40-206ENST00000443711 628 ntTSL 2 BASIC12.27□□□□□ -0.45
CDX1P47902 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC12.27□□□□□ -0.45
CDX1P47902 RN7SL692P-201ENST00000464677 288 ntBASIC12.27□□□□□ -0.45
CDX1P47902 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC12.27□□□□□ -0.45
CDX1P47902 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC12.27□□□□□ -0.45
CDX1P47902 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC12.27□□□□□ -0.45
CDX1P47902 AL596325.1-201ENST00000563991 1082 ntBASIC12.27□□□□□ -0.45
CDX1P47902 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC12.27□□□□□ -0.45
CDX1P47902 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC12.27□□□□□ -0.45
CDX1P47902 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC12.27□□□□□ -0.45
CDX1P47902 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
CDX1P47902 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC12.27□□□□□ -0.45
CDX1P47902 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC12.27□□□□□ -0.45
CDX1P47902 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
CDX1P47902 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CDX1P47902 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC12.27□□□□□ -0.45
CDX1P47902 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
CDX1P47902 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CDX1P47902 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CDX1P47902 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CDX1P47902 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
CDX1P47902 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC12.27□□□□□ -0.45
CDX1P47902 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
CDX1P47902 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
CDX1P47902 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
CDX1P47902 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CDX1P47902 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
CDX1P47902 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC12.27□□□□□ -0.45
CDX1P47902 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC12.27□□□□□ -0.45
CDX1P47902 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CDX1P47902 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CDX1P47902 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
CDX1P47902 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
CDX1P47902 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC12.26□□□□□ -0.45
CDX1P47902 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CDX1P47902 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC12.26□□□□□ -0.45
CDX1P47902 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC12.26□□□□□ -0.45
CDX1P47902 CD22-209ENST00000594250 2107 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CDX1P47902 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
CDX1P47902 MEST-206ENST00000416162 2158 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CDX1P47902 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CDX1P47902 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
CDX1P47902 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
CDX1P47902 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CDX1P47902 MST1P2-201ENST00000457982 2291 ntBASIC12.26□□□□□ -0.45
CDX1P47902 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC12.26□□□□□ -0.45
CDX1P47902 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
CDX1P47902 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CDX1P47902 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CDX1P47902 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CDX1P47902 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms