Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SHMT2P34897 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
SHMT2P34897 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHMT2P34897 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHMT2P34897 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHMT2P34897 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHMT2P34897 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHMT2P34897 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHMT2P34897 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
SHMT2P34897 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHMT2P34897 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC14.62□□□□□ -0.07
SHMT2P34897 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
SHMT2P34897 POM121L8P-201ENST00000417732 1281 ntBASIC14.62□□□□□ -0.07
SHMT2P34897 POM121L9P-203ENST00000441984 1285 ntBASIC14.62□□□□□ -0.07
SHMT2P34897 AC119751.2-201ENST00000504529 210 ntBASIC14.62□□□□□ -0.07
SHMT2P34897 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC14.62□□□□□ -0.07
SHMT2P34897 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC14.62□□□□□ -0.07
SHMT2P34897 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SHMT2P34897 AC023310.1-201ENST00000554836 735 ntBASIC14.62□□□□□ -0.07
SHMT2P34897 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
SHMT2P34897 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC14.62□□□□□ -0.07
SHMT2P34897 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.62□□□□□ -0.07
SHMT2P34897 AC010327.5-201ENST00000586923 3061 ntBASIC14.62□□□□□ -0.07
SHMT2P34897 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHMT2P34897 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHMT2P34897 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHMT2P34897 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHMT2P34897 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHMT2P34897 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHMT2P34897 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC14.62□□□□□ -0.07
SHMT2P34897 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.62□□□□□ -0.07
SHMT2P34897 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
SHMT2P34897 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SHMT2P34897 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.62□□□□□ -0.07
SHMT2P34897 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHMT2P34897 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHMT2P34897 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.61□□□□□ -0.07
SHMT2P34897 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC14.61□□□□□ -0.07
SHMT2P34897 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.61□□□□□ -0.07
SHMT2P34897 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHMT2P34897 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHMT2P34897 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHMT2P34897 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.61□□□□□ -0.07
SHMT2P34897 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHMT2P34897 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHMT2P34897 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHMT2P34897 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC14.61□□□□□ -0.07
SHMT2P34897 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SHMT2P34897 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SHMT2P34897 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC14.61□□□□□ -0.07
SHMT2P34897 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SHMT2P34897 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC14.61□□□□□ -0.07
SHMT2P34897 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
SHMT2P34897 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC14.61□□□□□ -0.07
SHMT2P34897 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC14.61□□□□□ -0.07
SHMT2P34897 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC14.61□□□□□ -0.07
SHMT2P34897 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC14.61□□□□□ -0.07
SHMT2P34897 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC14.61□□□□□ -0.07
SHMT2P34897 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC14.61□□□□□ -0.07
SHMT2P34897 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SHMT2P34897 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC14.61□□□□□ -0.07
SHMT2P34897 AL008721.1-201ENST00000609964 604 ntBASIC14.61□□□□□ -0.07
SHMT2P34897 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SHMT2P34897 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
SHMT2P34897 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SHMT2P34897 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.61□□□□□ -0.07
SHMT2P34897 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHMT2P34897 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
SHMT2P34897 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHMT2P34897 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
SHMT2P34897 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
SHMT2P34897 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
SHMT2P34897 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHMT2P34897 AHCYP2-201ENST00000430630 1300 ntBASIC14.61□□□□□ -0.07
SHMT2P34897 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHMT2P34897 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
SHMT2P34897 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHMT2P34897 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHMT2P34897 AL354989.2-201ENST00000435838 1540 ntBASIC14.61□□□□□ -0.07
SHMT2P34897 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHMT2P34897 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHMT2P34897 BX640514.1-201ENST00000583223 1918 ntBASIC14.6□□□□□ -0.07
SHMT2P34897 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHMT2P34897 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC14.6□□□□□ -0.07
SHMT2P34897 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC14.6□□□□□ -0.07
SHMT2P34897 AC126755.1-201ENST00000525846 6405 ntBASIC14.6□□□□□ -0.07
SHMT2P34897 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHMT2P34897 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.6□□□□□ -0.07
SHMT2P34897 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHMT2P34897 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
SHMT2P34897 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.6□□□□□ -0.07
SHMT2P34897 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHMT2P34897 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.6□□□□□ -0.07
SHMT2P34897 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHMT2P34897 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHMT2P34897 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHMT2P34897 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHMT2P34897 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC14.6□□□□□ -0.07
SHMT2P34897 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC14.6□□□□□ -0.07
SHMT2P34897 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms