Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
COL4A5P29400 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
COL4A5P29400 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A5P29400 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.29■□□□□ 0.36
COL4A5P29400 AC091951.1-201ENST00000512854 2465 ntBASIC17.29■□□□□ 0.36
COL4A5P29400 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC17.29■□□□□ 0.36
COL4A5P29400 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC17.29■□□□□ 0.36
COL4A5P29400 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A5P29400 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC17.29■□□□□ 0.36
COL4A5P29400 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
COL4A5P29400 HNRNPA1P58-201ENST00000403629 610 ntBASIC17.29■□□□□ 0.36
COL4A5P29400 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC17.29■□□□□ 0.36
COL4A5P29400 NME6-208ENST00000435684 599 ntTSL 2 BASIC17.29■□□□□ 0.36
COL4A5P29400 STK24P1-201ENST00000455035 1291 ntBASIC17.29■□□□□ 0.36
COL4A5P29400 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC17.29■□□□□ 0.36
COL4A5P29400 F11R-204ENST00000537746 1245 ntTSL 2 BASIC17.29■□□□□ 0.36
COL4A5P29400 AC140658.4-201ENST00000561990 352 ntBASIC17.29■□□□□ 0.36
COL4A5P29400 SNORD3B-1-201ENST00000577988 758 ntBASIC17.29■□□□□ 0.36
COL4A5P29400 GAS7-216ENST00000583882 553 ntTSL 5 BASIC17.29■□□□□ 0.36
COL4A5P29400 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC17.29■□□□□ 0.36
COL4A5P29400 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A5P29400 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A5P29400 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC17.28■□□□□ 0.36
COL4A5P29400 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
COL4A5P29400 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
COL4A5P29400 AL162727.3-201ENST00000635661 2787 ntBASIC17.28■□□□□ 0.36
COL4A5P29400 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
COL4A5P29400 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A5P29400 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
COL4A5P29400 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A5P29400 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC17.28■□□□□ 0.36
COL4A5P29400 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A5P29400 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A5P29400 OR10N1P-201ENST00000392758 869 ntBASIC17.28■□□□□ 0.36
COL4A5P29400 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC17.28■□□□□ 0.36
COL4A5P29400 AL161932.2-201ENST00000435436 679 ntBASIC17.28■□□□□ 0.36
COL4A5P29400 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC17.28■□□□□ 0.36
COL4A5P29400 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC17.28■□□□□ 0.36
COL4A5P29400 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
COL4A5P29400 RN7SL556P-201ENST00000582856 298 ntBASIC17.28■□□□□ 0.36
COL4A5P29400 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A5P29400 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC17.28■□□□□ 0.36
COL4A5P29400 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A5P29400 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A5P29400 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC17.28■□□□□ 0.36
COL4A5P29400 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A5P29400 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC17.28■□□□□ 0.36
COL4A5P29400 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC17.28■□□□□ 0.36
COL4A5P29400 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
COL4A5P29400 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A5P29400 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A5P29400 ZEB1-AS1-208ENST00000607166 2503 ntBASIC17.28■□□□□ 0.36
COL4A5P29400 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A5P29400 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A5P29400 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A5P29400 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC17.28■□□□□ 0.36
COL4A5P29400 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A5P29400 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A5P29400 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A5P29400 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC17.27■□□□□ 0.36
COL4A5P29400 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A5P29400 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC17.27■□□□□ 0.36
COL4A5P29400 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A5P29400 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
COL4A5P29400 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17.27■□□□□ 0.36
COL4A5P29400 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
COL4A5P29400 CCT8L1P-201ENST00000465400 1674 ntBASIC17.27■□□□□ 0.36
COL4A5P29400 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
COL4A5P29400 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A5P29400 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A5P29400 AC117503.4-201ENST00000623229 1418 ntBASIC17.27■□□□□ 0.36
COL4A5P29400 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC17.27■□□□□ 0.36
COL4A5P29400 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A5P29400 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC17.27■□□□□ 0.36
COL4A5P29400 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
COL4A5P29400 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
COL4A5P29400 IGHEP2-201ENST00000519308 1256 ntBASIC17.27■□□□□ 0.36
COL4A5P29400 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
COL4A5P29400 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC17.27■□□□□ 0.36
COL4A5P29400 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC17.27■□□□□ 0.36
COL4A5P29400 HPX-213ENST00000615166 826 ntTSL 5 BASIC17.27■□□□□ 0.36
COL4A5P29400 AP000769.1-203ENST00000637245 208 ntBASIC17.27■□□□□ 0.36
COL4A5P29400 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
COL4A5P29400 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
COL4A5P29400 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
COL4A5P29400 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
COL4A5P29400 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
COL4A5P29400 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
COL4A5P29400 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
COL4A5P29400 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
COL4A5P29400 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
COL4A5P29400 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A5P29400 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC17.27■□□□□ 0.36
COL4A5P29400 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC17.27■□□□□ 0.35
COL4A5P29400 AL365181.1-201ENST00000564032 1828 ntBASIC17.27■□□□□ 0.35
COL4A5P29400 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL4A5P29400 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL4A5P29400 MPI-203ENST00000535694 1523 ntTSL 2 BASIC17.27■□□□□ 0.35
COL4A5P29400 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC17.27■□□□□ 0.35
COL4A5P29400 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms