Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
APOEP02649 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
APOEP02649 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
APOEP02649 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
APOEP02649 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
APOEP02649 AC006001.1-201ENST00000325130 474 ntBASIC15.65■□□□□ 0.1
APOEP02649 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
APOEP02649 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
APOEP02649 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
APOEP02649 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC15.65■□□□□ 0.1
APOEP02649 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
APOEP02649 POM121L8P-201ENST00000417732 1281 ntBASIC15.65■□□□□ 0.1
APOEP02649 POM121L9P-203ENST00000441984 1285 ntBASIC15.65■□□□□ 0.1
APOEP02649 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC15.65■□□□□ 0.1
APOEP02649 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC15.65■□□□□ 0.1
APOEP02649 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC15.65■□□□□ 0.1
APOEP02649 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
APOEP02649 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC15.65■□□□□ 0.1
APOEP02649 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
APOEP02649 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
APOEP02649 AC138969.2-201ENST00000532739 9932 ntBASIC15.65■□□□□ 0.1
APOEP02649 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
APOEP02649 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
APOEP02649 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
APOEP02649 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
APOEP02649 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
APOEP02649 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
APOEP02649 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC15.64■□□□□ 0.09
APOEP02649 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC15.64■□□□□ 0.09
APOEP02649 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
APOEP02649 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
APOEP02649 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
APOEP02649 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.64■□□□□ 0.09
APOEP02649 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
APOEP02649 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
APOEP02649 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
APOEP02649 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
APOEP02649 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.64■□□□□ 0.09
APOEP02649 MPV17-206ENST00000402722 827 ntTSL 3 BASIC15.64■□□□□ 0.09
APOEP02649 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
APOEP02649 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC15.64■□□□□ 0.09
APOEP02649 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC15.64■□□□□ 0.09
APOEP02649 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
APOEP02649 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC15.64■□□□□ 0.09
APOEP02649 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC15.64■□□□□ 0.09
APOEP02649 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
APOEP02649 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC15.64■□□□□ 0.09
APOEP02649 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC15.64■□□□□ 0.09
APOEP02649 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC15.64■□□□□ 0.09
APOEP02649 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC15.64■□□□□ 0.09
APOEP02649 AC119751.2-201ENST00000504529 210 ntBASIC15.64■□□□□ 0.09
APOEP02649 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC15.64■□□□□ 0.09
APOEP02649 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC15.64■□□□□ 0.09
APOEP02649 AC023310.1-201ENST00000554836 735 ntBASIC15.64■□□□□ 0.09
APOEP02649 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC15.64■□□□□ 0.09
APOEP02649 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC15.64■□□□□ 0.09
APOEP02649 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC15.64■□□□□ 0.09
APOEP02649 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC15.64■□□□□ 0.09
APOEP02649 AC140479.7-201ENST00000636301 2332 ntBASIC15.64■□□□□ 0.09
APOEP02649 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
APOEP02649 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.64■□□□□ 0.09
APOEP02649 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
APOEP02649 AHCYP2-201ENST00000430630 1300 ntBASIC15.64■□□□□ 0.09
APOEP02649 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
APOEP02649 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
APOEP02649 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
APOEP02649 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
APOEP02649 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
APOEP02649 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
APOEP02649 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
APOEP02649 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC15.63■□□□□ 0.09
APOEP02649 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
APOEP02649 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC15.63■□□□□ 0.09
APOEP02649 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC15.63■□□□□ 0.09
APOEP02649 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
APOEP02649 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
APOEP02649 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
APOEP02649 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
APOEP02649 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC15.63■□□□□ 0.09
APOEP02649 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.63■□□□□ 0.09
APOEP02649 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC15.63■□□□□ 0.09
APOEP02649 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
APOEP02649 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
APOEP02649 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
APOEP02649 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
APOEP02649 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
APOEP02649 MIR1202-201ENST00000408529 83 ntBASIC15.63■□□□□ 0.09
APOEP02649 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
APOEP02649 HLA-V-201ENST00000429037 534 ntBASIC15.63■□□□□ 0.09
APOEP02649 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC15.63■□□□□ 0.09
APOEP02649 AC244107.1-201ENST00000442033 332 ntBASIC15.63■□□□□ 0.09
APOEP02649 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
APOEP02649 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC15.63■□□□□ 0.09
APOEP02649 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC15.63■□□□□ 0.09
APOEP02649 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC15.63■□□□□ 0.09
APOEP02649 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC15.63■□□□□ 0.09
APOEP02649 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC15.63■□□□□ 0.09
APOEP02649 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC15.63■□□□□ 0.09
APOEP02649 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
APOEP02649 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms