Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC17.32■□□□□ 0.36
CDKL5O76039 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
CDKL5O76039 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDKL5O76039 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC17.32■□□□□ 0.36
CDKL5O76039 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CDKL5O76039 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDKL5O76039 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDKL5O76039 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CDKL5O76039 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
CDKL5O76039 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CDKL5O76039 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC17.31■□□□□ 0.36
CDKL5O76039 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDKL5O76039 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
CDKL5O76039 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CDKL5O76039 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC17.31■□□□□ 0.36
CDKL5O76039 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
CDKL5O76039 GRAP-202ENST00000395635 834 ntTSL 2 BASIC17.31■□□□□ 0.36
CDKL5O76039 CD8B2-202ENST00000417670 633 ntBASIC17.31■□□□□ 0.36
CDKL5O76039 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC17.31■□□□□ 0.36
CDKL5O76039 TMEM14DP-201ENST00000422205 345 ntBASIC17.31■□□□□ 0.36
CDKL5O76039 AC016694.1-201ENST00000434179 700 ntBASIC17.31■□□□□ 0.36
CDKL5O76039 KRT17P7-201ENST00000451704 1104 ntBASIC17.31■□□□□ 0.36
CDKL5O76039 ALG3P1-201ENST00000508806 1114 ntBASIC17.31■□□□□ 0.36
CDKL5O76039 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC17.31■□□□□ 0.36
CDKL5O76039 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC17.31■□□□□ 0.36
CDKL5O76039 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CDKL5O76039 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CDKL5O76039 LARP4-220ENST00000615080 856 ntTSL 5 BASIC17.31■□□□□ 0.36
CDKL5O76039 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
CDKL5O76039 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CDKL5O76039 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CDKL5O76039 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDKL5O76039 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDKL5O76039 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDKL5O76039 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC17.31■□□□□ 0.36
CDKL5O76039 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC17.31■□□□□ 0.36
CDKL5O76039 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC17.31■□□□□ 0.36
CDKL5O76039 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDKL5O76039 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
CDKL5O76039 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDKL5O76039 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC17.3■□□□□ 0.36
CDKL5O76039 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC17.3■□□□□ 0.36
CDKL5O76039 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CDKL5O76039 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC17.3■□□□□ 0.36
CDKL5O76039 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC17.3■□□□□ 0.36
CDKL5O76039 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
CDKL5O76039 ANKRD30BP2-201ENST00000435744 1610 ntBASIC17.3■□□□□ 0.36
CDKL5O76039 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC17.3■□□□□ 0.36
CDKL5O76039 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC17.3■□□□□ 0.36
CDKL5O76039 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
CDKL5O76039 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC17.3■□□□□ 0.36
CDKL5O76039 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC17.3■□□□□ 0.36
CDKL5O76039 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
CDKL5O76039 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 AC106820.3-201ENST00000561653 397 ntBASIC17.3■□□□□ 0.36
CDKL5O76039 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 BX088702.1-201ENST00000610784 235 ntBASIC17.3■□□□□ 0.36
CDKL5O76039 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC17.3■□□□□ 0.36
CDKL5O76039 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC17.3■□□□□ 0.36
CDKL5O76039 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CDKL5O76039 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDKL5O76039 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC17.3■□□□□ 0.36
CDKL5O76039 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC17.3■□□□□ 0.36
CDKL5O76039 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDKL5O76039 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDKL5O76039 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CDKL5O76039 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC17.29■□□□□ 0.36
CDKL5O76039 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDKL5O76039 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDKL5O76039 AC020910.5-201ENST00000623668 1865 ntBASIC17.29■□□□□ 0.36
CDKL5O76039 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDKL5O76039 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
CDKL5O76039 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDKL5O76039 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CDKL5O76039 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms