Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC18.76■□□□□ 0.59
NPHP1O15259 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NPHP1O15259 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
NPHP1O15259 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC18.76■□□□□ 0.59
NPHP1O15259 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
NPHP1O15259 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC18.76■□□□□ 0.59
NPHP1O15259 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
NPHP1O15259 CEP164P1-201ENST00000455142 418 ntBASIC18.76■□□□□ 0.59
NPHP1O15259 POU5F1P2-201ENST00000521750 823 ntBASIC18.76■□□□□ 0.59
NPHP1O15259 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
NPHP1O15259 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC18.76■□□□□ 0.59
NPHP1O15259 MIR4783-201ENST00000580343 82 ntBASIC18.76■□□□□ 0.59
NPHP1O15259 RPS15-202ENST00000585665 467 ntTSL 3 BASIC18.76■□□□□ 0.59
NPHP1O15259 AP003419.4-201ENST00000616071 517 ntBASIC18.76■□□□□ 0.59
NPHP1O15259 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NPHP1O15259 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
NPHP1O15259 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
NPHP1O15259 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NPHP1O15259 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NPHP1O15259 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
NPHP1O15259 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
NPHP1O15259 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC18.76■□□□□ 0.59
NPHP1O15259 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC18.76■□□□□ 0.59
NPHP1O15259 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC18.76■□□□□ 0.59
NPHP1O15259 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NPHP1O15259 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NPHP1O15259 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NPHP1O15259 AC144831.1-201ENST00000573312 2656 ntBASIC18.76■□□□□ 0.59
NPHP1O15259 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NPHP1O15259 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC18.76■□□□□ 0.59
NPHP1O15259 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC18.76■□□□□ 0.59
NPHP1O15259 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NPHP1O15259 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NPHP1O15259 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
NPHP1O15259 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
NPHP1O15259 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
NPHP1O15259 TBC1D3J-201ENST00000620719 1426 ntBASIC18.75■□□□□ 0.59
NPHP1O15259 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC18.75■□□□□ 0.59
NPHP1O15259 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
NPHP1O15259 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
NPHP1O15259 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
NPHP1O15259 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC18.75■□□□□ 0.59
NPHP1O15259 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NPHP1O15259 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
NPHP1O15259 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
NPHP1O15259 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
NPHP1O15259 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
NPHP1O15259 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
NPHP1O15259 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NPHP1O15259 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NPHP1O15259 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC18.75■□□□□ 0.59
NPHP1O15259 MDH2-205ENST00000461263 648 ntTSL 2 BASIC18.75■□□□□ 0.59
NPHP1O15259 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC18.75■□□□□ 0.59
NPHP1O15259 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC18.75■□□□□ 0.59
NPHP1O15259 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
NPHP1O15259 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NPHP1O15259 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC18.75■□□□□ 0.59
NPHP1O15259 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC18.75■□□□□ 0.59
NPHP1O15259 AC009884.2-201ENST00000603110 324 ntBASIC18.75■□□□□ 0.59
NPHP1O15259 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC18.75■□□□□ 0.59
NPHP1O15259 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC18.75■□□□□ 0.59
NPHP1O15259 AC006453.1-201ENST00000636037 1257 ntBASIC18.75■□□□□ 0.59
NPHP1O15259 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC18.75■□□□□ 0.59
NPHP1O15259 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
NPHP1O15259 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NPHP1O15259 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NPHP1O15259 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NPHP1O15259 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC18.75■□□□□ 0.59
NPHP1O15259 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
NPHP1O15259 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NPHP1O15259 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
NPHP1O15259 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
NPHP1O15259 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NPHP1O15259 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
NPHP1O15259 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NPHP1O15259 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NPHP1O15259 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
NPHP1O15259 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
NPHP1O15259 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NPHP1O15259 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NPHP1O15259 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC18.74■□□□□ 0.59
NPHP1O15259 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
NPHP1O15259 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
NPHP1O15259 RBM38-204ENST00000371219 760 ntTSL 2 BASIC18.74■□□□□ 0.59
NPHP1O15259 AC010141.1-201ENST00000411585 623 ntBASIC18.74■□□□□ 0.59
NPHP1O15259 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC18.74■□□□□ 0.59
NPHP1O15259 AC073150.1-201ENST00000450406 1084 ntBASIC18.74■□□□□ 0.59
NPHP1O15259 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC18.74■□□□□ 0.59
NPHP1O15259 AC009779.1-201ENST00000551138 283 ntBASIC18.74■□□□□ 0.59
NPHP1O15259 RN7SL555P-201ENST00000584742 339 ntBASIC18.74■□□□□ 0.59
NPHP1O15259 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC18.74■□□□□ 0.59
NPHP1O15259 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC18.74■□□□□ 0.59
NPHP1O15259 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NPHP1O15259 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC18.74■□□□□ 0.59
NPHP1O15259 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC18.74■□□□□ 0.59
NPHP1O15259 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC18.74■□□□□ 0.59
NPHP1O15259 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
NPHP1O15259 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
NPHP1O15259 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NPHP1O15259 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms