Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC12.75□□□□□ -0.37
SDCBPO00560 TPT1P11-201ENST00000458482 498 ntBASIC12.75□□□□□ -0.37
SDCBPO00560 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
SDCBPO00560 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC12.75□□□□□ -0.37
SDCBPO00560 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC12.75□□□□□ -0.37
SDCBPO00560 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC12.75□□□□□ -0.37
SDCBPO00560 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC12.75□□□□□ -0.37
SDCBPO00560 AC135586.1-201ENST00000539323 574 ntBASIC12.75□□□□□ -0.37
SDCBPO00560 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SDCBPO00560 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC12.75□□□□□ -0.37
SDCBPO00560 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SDCBPO00560 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
SDCBPO00560 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC12.75□□□□□ -0.37
SDCBPO00560 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC12.75□□□□□ -0.37
SDCBPO00560 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC12.75□□□□□ -0.37
SDCBPO00560 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC12.75□□□□□ -0.37
SDCBPO00560 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
SDCBPO00560 AC006538.3-201ENST00000612495 578 ntBASIC12.75□□□□□ -0.37
SDCBPO00560 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
SDCBPO00560 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SDCBPO00560 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
SDCBPO00560 AL137784.3-201ENST00000623858 2288 ntBASIC12.75□□□□□ -0.37
SDCBPO00560 AL157414.3-201ENST00000624276 1954 ntBASIC12.75□□□□□ -0.37
SDCBPO00560 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SDCBPO00560 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
SDCBPO00560 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SDCBPO00560 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC12.75□□□□□ -0.37
SDCBPO00560 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SDCBPO00560 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC12.75□□□□□ -0.37
SDCBPO00560 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
SDCBPO00560 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC12.75□□□□□ -0.37
SDCBPO00560 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
SDCBPO00560 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC12.75□□□□□ -0.37
SDCBPO00560 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC12.75□□□□□ -0.37
SDCBPO00560 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
SDCBPO00560 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC12.74□□□□□ -0.37
SDCBPO00560 MX1-218ENST00000619682 1980 ntTSL 5 BASIC12.74□□□□□ -0.37
SDCBPO00560 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
SDCBPO00560 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
SDCBPO00560 DMBT1P1-203ENST00000636837 4628 ntBASIC12.74□□□□□ -0.37
SDCBPO00560 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 USP4-203ENST00000415188 1454 ntTSL 3 BASIC12.74□□□□□ -0.37
SDCBPO00560 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC12.74□□□□□ -0.37
SDCBPO00560 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC12.74□□□□□ -0.37
SDCBPO00560 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC12.74□□□□□ -0.37
SDCBPO00560 AC009477.1-201ENST00000452936 217 ntBASIC12.74□□□□□ -0.37
SDCBPO00560 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC12.74□□□□□ -0.37
SDCBPO00560 MEIS3P1-201ENST00000495167 958 ntBASIC12.74□□□□□ -0.37
SDCBPO00560 AC022447.6-201ENST00000515522 438 ntBASIC12.74□□□□□ -0.37
SDCBPO00560 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 AC092337.1-201ENST00000568699 1129 ntBASIC12.74□□□□□ -0.37
SDCBPO00560 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC12.74□□□□□ -0.37
SDCBPO00560 PRR29-204ENST00000577953 565 ntTSL 4 BASIC12.74□□□□□ -0.37
SDCBPO00560 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC12.74□□□□□ -0.37
SDCBPO00560 GPALPP1-207ENST00000611650 899 ntBASIC12.74□□□□□ -0.37
SDCBPO00560 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC12.74□□□□□ -0.37
SDCBPO00560 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC12.74□□□□□ -0.37
SDCBPO00560 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC12.74□□□□□ -0.37
SDCBPO00560 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC12.74□□□□□ -0.37
SDCBPO00560 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC12.74□□□□□ -0.37
SDCBPO00560 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC12.74□□□□□ -0.37
SDCBPO00560 AC023090.2-201ENST00000625182 2110 ntBASIC12.74□□□□□ -0.37
SDCBPO00560 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
SDCBPO00560 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
SDCBPO00560 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
SDCBPO00560 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SDCBPO00560 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
SDCBPO00560 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 AC022144.1-201ENST00000602255 1580 ntBASIC12.73□□□□□ -0.37
SDCBPO00560 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SDCBPO00560 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC12.73□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms