Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 KRT90P-201ENST00000549264 1064 ntBASIC15.9■□□□□ 0.14
SIX2Q9NPC8 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 AC027307.3-201ENST00000594262 1100 ntBASIC15.9■□□□□ 0.14
SIX2Q9NPC8 AC073413.1-201ENST00000603927 732 ntBASIC15.9■□□□□ 0.14
SIX2Q9NPC8 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC15.9■□□□□ 0.14
SIX2Q9NPC8 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 HPD-204ENST00000543163 1709 ntTSL 5 BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 FAM8A4P-201ENST00000435433 1213 ntBASIC15.89■□□□□ 0.13
SIX2Q9NPC8 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 PIGL-212ENST00000581006 554 ntTSL 4 BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 ANKRD30BP2-201ENST00000435744 1610 ntBASIC15.89■□□□□ 0.13
SIX2Q9NPC8 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
SIX2Q9NPC8 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 OVCH1-AS1-204ENST00000641955 5529 ntBASIC15.88■□□□□ 0.13
SIX2Q9NPC8 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 MPV17-205ENST00000402310 906 ntTSL 5 BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms