Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM39Q9HCM9 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.85□□□□□ -0.03
TRIM39Q9HCM9 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC14.85□□□□□ -0.03
TRIM39Q9HCM9 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 SNX21-203ENST00000372541 771 ntTSL 2 BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 AL391280.1-201ENST00000506969 1062 ntBASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 COX5BP1-201ENST00000507622 393 ntBASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 OR10B1P-201ENST00000601666 907 ntBASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 AC007686.3-201ENST00000619017 3487 ntBASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
TRIM39Q9HCM9 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC14.83□□□□□ -0.03
TRIM39Q9HCM9 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
TRIM39Q9HCM9 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
TRIM39Q9HCM9 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
TRIM39Q9HCM9 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC14.83□□□□□ -0.03
TRIM39Q9HCM9 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.83□□□□□ -0.03
TRIM39Q9HCM9 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
TRIM39Q9HCM9 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC14.83□□□□□ -0.03
TRIM39Q9HCM9 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
TRIM39Q9HCM9 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.03
TRIM39Q9HCM9 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
TRIM39Q9HCM9 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
TRIM39Q9HCM9 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
TRIM39Q9HCM9 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
TRIM39Q9HCM9 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
TRIM39Q9HCM9 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 TLE1P1-201ENST00000422965 589 ntBASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 AL583810.1-201ENST00000553344 1045 ntBASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 C2orf69P2-201ENST00000562032 1123 ntBASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 RN7SL713P-201ENST00000582127 302 ntBASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 AP000593.2-201ENST00000542775 1433 ntBASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 LINC00528-201ENST00000600723 2160 ntBASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
TRIM39Q9HCM9 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 GSN-215ENST00000545652 2428 ntTSL 2 BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms