Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 SYT17-208ENST00000568433 812 ntTSL 3 BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 AC022748.3-201ENST00000621828 275 ntBASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 AL008718.2-201ENST00000609206 1313 ntBASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 AJ011931.1-201ENST00000618749 2492 ntBASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 E2F3P2-201ENST00000447755 1422 ntBASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 SCARNA20.5-201ENST00000516991 142 ntBASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 AC100757.4-201ENST00000626934 759 ntBASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
CHMP4AQ9BY43 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 DPM3-202ENST00000368399 517 ntBASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 AL157407.1-201ENST00000435784 904 ntBASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 AKR7A2P1-201ENST00000460134 915 ntBASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 KC6-205ENST00000599934 556 ntTSL 4 BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 AC138649.2-201ENST00000615886 705 ntBASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 MBP-202ENST00000355994 2772 ntTSL 5 BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
CHMP4AQ9BY43 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 AC013726.1-201ENST00000563747 2285 ntBASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms